MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 73298 bp
Accession: NC_015942 Location: 2863364..2936661 Organism: Acidithiobacillus ferrivorans SS3 Replicon: chromosome
Accession: NC_015942 Location: 2863364..2936661 Organism: Acidithiobacillus ferrivorans SS3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIFE_RS13910 () | 2858933..2860645 | - | 1713 | WP_014030213.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| ACIFE_RS13915 () | 2860642..2860914 | - | 273 | WP_014030214.1 | HPr family phosphocarrier protein | - |
| ACIFE_RS13920 () | 2860946..2861368 | - | 423 | WP_014030215.1 | PTS sugar transporter subunit IIA | - |
| ACIFE_RS13925 () | 2861365..2862264 | - | 900 | WP_014030216.1 | RNase adapter RapZ | - |
| ACIFE_RS13930 () | 2862264..2863196 | - | 933 | WP_014030217.1 | HPr(Ser) kinase/phosphatase | - |
| ACIFE_RS13935 () | 2863251..2863697 | - | 447 | WP_014030218.1 | PTS sugar transporter subunit IIA | - |
| ACIFE_RS13940 () | 2863704..2864045 | - | 342 | WP_014030219.1 | ribosome-associated translation inhibitor RaiA | - |
| ACIFE_RS13945 () | 2864157..2865584 | - | 1428 | WP_014030220.1 | RNA polymerase factor sigma-54 | - |
| ACIFE_RS13950 () | 2865597..2866322 | - | 726 | WP_014030221.1 | Lipopolysaccharide export system ATP-binding protein LptB | VF |
| ACIFE_RS13955 () | 2866319..2866864 | - | 546 | WP_143217793.1 | lipopolysaccharide transport periplasmic protein LptA | - |
| ACIFE_RS13960 () | 2866839..2867408 | - | 570 | WP_041650007.1 | LPS export ABC transporter periplasmic protein LptC | - |
| ACIFE_RS13965 () | 2867434..2867988 | - | 555 | WP_014030224.1 | haloacid dehalogenase | - |
| ACIFE_RS13970 () | 2867985..2868971 | - | 987 | WP_041650010.1 | Arabinose 5-phosphate isomerase KdsD | VF |
| ACIFE_RS13975 () | 2868981..2869259 | - | 279 | WP_014030226.1 | hypothetical protein | - |
| ACIFE_RS13980 () | 2869292..2869726 | - | 435 | WP_014030227.1 | hypothetical protein | - |
| ACIFE_RS13985 () | 2869716..2870405 | - | 690 | WP_014030228.1 | nucleotidyltransferase family protein | - |
| ACIFE_RS13990 () | 2870378..2871403 | - | 1026 | WP_014030229.1 | phosphotransferase | - |
| ACIFE_RS13995 () | 2871433..2873628 | + | 2196 | WP_014030230.1 | LPS-assembly protein LptD | - |
| ACIFE_RS14000 () | 2873628..2875061 | + | 1434 | WP_014030231.1 | peptidylprolyl isomerase | - |
| ACIFE_RS14005 () | 2875054..2875866 | + | 813 | WP_041650013.1 | Inner membrane transport permease YadH | VF |
| ACIFE_RS14010 () | 2875964..2876218 | + | 255 | WP_014030233.1 | BolA/IbaG family iron-sulfur metabolism protein | - |
| ACIFE_RS14015 () | 2876254..2876586 | + | 333 | WP_014030234.1 | Grx4 family monothiol glutaredoxin | - |
| ACIFE_RS14020 () | 2876596..2877870 | + | 1275 | WP_014030235.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| ACIFE_RS14025 () | 2877867..2878514 | + | 648 | WP_014030236.1 | ATP phosphoribosyltransferase | - |
| ACIFE_RS14030 () | 2878511..2879812 | + | 1302 | WP_014030237.1 | histidinol dehydrogenase | - |
| ACIFE_RS14035 () | 2879809..2880888 | + | 1080 | WP_014030238.1 | histidinol-phosphate transaminase | - |
| ACIFE_RS14040 () | 2880885..2881484 | + | 600 | WP_014030239.1 | imidazoleglycerol-phosphate dehydratase HisB | - |
| ACIFE_RS14045 () | 2881481..2882152 | + | 672 | WP_014030240.1 | imidazole glycerol phosphate synthase subunit HisH | - |
| ACIFE_RS14050 () | 2882192..2882920 | + | 729 | WP_014030241.1 | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | - |
| ACIFE_RS14055 () | 2882925..2883686 | + | 762 | WP_014030242.1 | imidazole glycerol phosphate synthase subunit HisF | - |
| ACIFE_RS14060 () | 2883766..2884464 | + | 699 | WP_014030243.1 | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE | - |
| ACIFE_RS14065 () | 2884539..2884757 | + | 219 | WP_014030244.1 | Sec-independent protein translocase subunit TatA | - |
| ACIFE_RS14070 () | 2884764..2885135 | + | 372 | WP_014030245.1 | Sec-independent protein translocase protein TatB | - |
| ACIFE_RS14075 () | 2885196..2886032 | + | 837 | WP_014030246.1 | twin-arginine translocase subunit TatC | - |
| ACIFE_RS14080 () | 2886294..2887394 | + | 1101 | WP_081463293.1 | GDP-mannose-dependent monoacylated alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase | VF |
| ACIFE_RS14085 () | 2887391..2887747 | + | 357 | WP_014030248.1 | hypothetical protein | - |
| ACIFE_RS14090 () | 2888085..2888288 | + | 204 | WP_014030249.1 | cold-shock protein | - |
| ACIFE_RS14100 () | 2888590..2888910 | - | 321 | WP_041650020.1 | hypothetical protein | - |
| ACIFE_RS16525 () | 2888912..2891908 | + | 2997 | WP_014030251.1 | putative signaling protein | VF |
| ACIFE_RS14110 () | 2892086..2893987 | + | 1902 | WP_041651222.1 | KUP/HAK/KT family potassium transporter | - |
| ACIFE_RS14115 () | 2894005..2894433 | - | 429 | WP_014030253.1 | hypothetical protein | - |
| ACIFE_RS14120 () | 2894436..2894855 | - | 420 | WP_014030254.1 | hypothetical protein | - |
| ACIFE_RS14125 () | 2895119..2896393 | - | 1275 | WP_014030256.1 | dihydroorotase | - |
| ACIFE_RS14130 () | 2896399..2897382 | - | 984 | WP_014030257.1 | aspartate carbamoyltransferase catalytic subunit | - |
| ACIFE_RS14135 () | 2897379..2897885 | - | 507 | WP_014030258.1 | bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR | - |
| ACIFE_RS14140 () | 2897882..2898313 | - | 432 | WP_014030259.1 | Holliday junction resolvase RuvX | - |
| ACIFE_RS14145 () | 2898306..2898863 | - | 558 | WP_014030260.1 | YqgE/AlgH family protein | - |
| ACIFE_RS14150 () | 2899070..2899990 | - | 921 | WP_014030261.1 | DUF3150 domain-containing protein | - |
| ACIFE_RS14155 () | 2900005..2900214 | - | 210 | WP_014030262.1 | hypothetical protein | - |
| ACIFE_RS14160 () | 2900892..2901101 | - | 210 | WP_014030263.1 | hypothetical protein | - |
| ACIFE_RS14165 () | 2901256..2901447 | - | 192 | WP_014030264.1 | hypothetical protein | - |
| ACIFE_RS14170 () | 2901444..2902238 | - | 795 | WP_014030265.1 | ATP-binding protein | - |
| ACIFE_RS14175 () | 2902241..2903563 | - | 1323 | WP_014030266.1 | IS481 family transposase ISChy6 | Transposase |
| ACIFE_RS14180 () | 2903693..2904226 | - | 534 | WP_014030267.1 | hypothetical protein | - |
| ACIFE_RS14185 () | 2904542..2906059 | - | 1518 | WP_014030268.1 | hypothetical protein | - |
| ACIFE_RS14190 () | 2906548..2906781 | + | 234 | WP_041650023.1 | hypothetical protein | - |
| ACIFE_RS14195 () | 2906866..2907453 | - | 588 | WP_014030271.1 | hypothetical protein | - |
| ACIFE_RS14200 () | 2907864..2908832 | + | 969 | WP_014030272.1 | ParM/StbA family protein | - |
| ACIFE_RS14205 () | 2908855..2909334 | + | 480 | WP_014030273.1 | hypothetical protein | - |
| ACIFE_RS14210 () | 2909338..2909664 | + | 327 | WP_009569263.1 | YbjQ family protein | - |
| ACIFE_RS14215 () | 2909693..2910370 | - | 678 | WP_014030274.1 | hypothetical protein | - |
| ACIFE_RS14220 () | 2910391..2910687 | - | 297 | WP_014030275.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| ACIFE_RS14225 () | 2910681..2910917 | - | 237 | WP_014030276.1 | AbrB family transcriptional regulator | Antitoxin Detail |
| ACIFE_RS14230 () | 2911455..2912036 | - | 582 | WP_041651225.1 | SocA family protein | - |
| ACIFE_RS14235 () | 2912111..2912761 | - | 651 | WP_014030279.1 | hypothetical protein | - |
| ACIFE_RS14240 () | 2912767..2913222 | - | 456 | WP_014030280.1 | DUF29 domain-containing protein | - |
| ACIFE_RS14245 () | 2913236..2913457 | - | 222 | WP_014030281.1 | hypothetical protein | - |
| ACIFE_RS14250 () | 2913478..2914128 | - | 651 | WP_014030282.1 | hypothetical protein | - |
| ACIFE_RS14255 () | 2914259..2914672 | - | 414 | WP_014030283.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| ACIFE_RS14260 () | 2914669..2914899 | - | 231 | WP_014030284.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| ACIFE_RS14265 () | 2915033..2915539 | - | 507 | WP_014030285.1 | GNAT family N-acetyltransferase | Toxin Detail |
| ACIFE_RS14270 () | 2915536..2915814 | - | 279 | WP_014030286.1 | DUF1778 domain-containing protein | - |
| ACIFE_RS14275 () | 2915918..2919280 | - | 3363 | WP_014030287.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| ACIFE_RS14280 () | 2919305..2920837 | - | 1533 | WP_041651228.1 | conjugal transfer protein TraH | - |
| ACIFE_RS14285 () | 2920935..2921852 | - | 918 | WP_148260366.1 | conjugal transfer protein TraF | - |
| ACIFE_RS14290 () | 2921897..2922385 | - | 489 | WP_148260367.1 | hypothetical protein | VF |
| ACIFE_RS14295 () | 2922635..2922904 | + | 270 | WP_148260338.1 | hypothetical protein | - |
| ACIFE_RS17195 () | 2922909..2923046 | + | 138 | WP_014030293.1 | hypothetical protein | - |
| ACIFE_RS17200 () | 2923055..2923228 | + | 174 | WP_009566328.1 | hypothetical protein | - |
| ACIFE_RS14300 () | 2923267..2924187 | - | 921 | WP_014030294.1 | sigma-70 family RNA polymerase sigma factor | - |
| ACIFE_RS14305 () | 2924187..2926601 | - | 2415 | WP_014030295.1 | HD domain-containing protein | - |
| ACIFE_RS14310 () | 2926841..2928178 | + | 1338 | WP_014028568.1 | ISNCY family transposase ISAcif1 | Transposase |
| ACIFE_RS14315 () | 2928182..2929090 | + | 909 | WP_014028569.1 | DUF4338 domain-containing protein | - |
| ACIFE_RS14320 () | 2929138..2929482 | - | 345 | WP_014030296.1 | hypothetical protein | - |
| ACIFE_RS14325 () | 2929494..2930429 | - | 936 | WP_081463268.1 | hypothetical protein | - |
| ACIFE_RS14330 () | 2930422..2931837 | - | 1416 | WP_014030298.1 | RRXRR domain-containing protein | - |
| ACIFE_RS14335 () | 2932129..2932335 | - | 207 | WP_041650032.1 | hypothetical protein | - |
| ACIFE_RS14340 () | 2932409..2934238 | - | 1830 | WP_014030300.1 | TraM recognition domain-containing protein | - |
| ACIFE_RS14345 () | 2934318..2934728 | - | 411 | WP_014030301.1 | single-stranded DNA-binding protein | - |
| ACIFE_RS14350 () | 2934955..2935905 | - | 951 | WP_014030302.1 | hypothetical protein | - |
| ACIFE_RS14355 () | 2935899..2937263 | - | 1365 | WP_014030303.1 | DNA topoisomerase type IA central domain-containing protein | - |
| ACIFE_RS14360 () | 2937393..2937848 | + | 456 | WP_014030304.1 | hypothetical protein | - |
| ACIFE_RS14365 () | 2938021..2938284 | + | 264 | WP_014030305.1 | hypothetical protein | - |
| ACIFE_RS14370 () | 2938423..2939346 | + | 924 | WP_014030306.1 | AAA family ATPase | - |
| ACIFE_RS14375 () | 2939463..2939825 | + | 363 | WP_014030308.1 | hypothetical protein | - |
| ACIFE_RS14380 () | 2939896..2940216 | + | 321 | WP_014030309.1 | hypothetical protein | - |
| ACIFE_RS14385 () | 2940342..2940791 | + | 450 | WP_014030310.1 | hypothetical protein | - |
| ACIFE_RS14390 () | 2940859..2941419 | + | 561 | WP_014030311.1 | M50 family metallopeptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|