MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 60745 bp
Accession: NC_014228 Location: 2879260..2940004 Organism: Xenorhabdus nematophila ATCC 19061 Replicon: chromosome
Accession: NC_014228 Location: 2879260..2940004 Organism: Xenorhabdus nematophila ATCC 19061 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XNC1_RS11990 (XNC1_2863) | 2874791..2875675 | + | 885 | WP_013184669.1 | IS982 family transposase | - |
| XNC1_RS22930 (XNC1_2864) | 2875699..2875824 | - | 126 | Protein_2381 | IS110 family transposase | - |
| XNC1_RS11995 (XNC1_2865) | 2875993..2876916 | + | 924 | Protein_2382 | IS630 family transposase | - |
| XNC1_RS12000 (XNC1_2866) | 2877481..2878364 | + | 884 | Protein_2383 | LysR family transcriptional regulator | - |
| XNC1_RS12005 (XNC1_2868) | 2878517..2879449 | - | 933 | Protein_2384 | NupC/NupG family nucleoside CNT transporter | - |
| XNC1_RS22310 | 2879464..2880935 | - | 1472 | Protein_2385 | IS3 family transposase IS1240 | Transposase |
| XNC1_RS23815 (XNC1_2873) | 2881172..2881396 | + | 225 | WP_010846802.1 | hypothetical protein | - |
| XNC1_RS21515 | 2881520..2882391 | + | 872 | Protein_2387 | IS630 family transposase ISCARN44 | Transposase |
| XNC1_RS12030 (XNC1_2876) | 2882721..2883146 | - | 426 | WP_012987825.1 | type II toxin-antitoxin system VapC family toxin | - |
| XNC1_RS12035 (XNC1_2877) | 2883146..2883400 | - | 255 | WP_010846804.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| XNC1_RS12040 (XNC1_2878) | 2883625..2883954 | + | 330 | WP_010846805.1 | type I toxin-antitoxin system SymE family toxin | - |
| XNC1_RS12045 (XNC1_2879) | 2884095..2884433 | + | 339 | WP_010846806.1 | SymE family type I addiction module toxin | - |
| XNC1_RS12050 (XNC1_2880) | 2884536..2884823 | + | 288 | WP_013184681.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| XNC1_RS12055 (XNC1_2881) | 2884834..2885118 | + | 285 | WP_010846808.1 | putative addiction module antidote protein | Antitoxin Detail |
| XNC1_RS12060 (XNC1_2882) | 2885201..2885584 | - | 384 | WP_013184682.1 | hypothetical protein | - |
| XNC1_RS12065 (XNC1_2883) | 2885705..2885914 | - | 210 | WP_013184683.1 | hypothetical protein | - |
| XNC1_RS12070 (XNC1_2884) | 2886125..2886439 | - | 315 | WP_013184684.1 | hypothetical protein | - |
| XNC1_RS12075 (XNC1_2885) | 2886443..2886967 | - | 525 | WP_013184685.1 | hypothetical protein | - |
| XNC1_RS23750 | 2886971..2887081 | - | 111 | Protein_2398 | RHS repeat protein | - |
| XNC1_RS12090 (XNC1_2887) | 2887579..2887770 | - | 192 | WP_143767649.1 | hypothetical protein | - |
| XNC1_RS12095 (XNC1_2889) | 2887800..2888801 | - | 1002 | WP_013184689.1 | Tyrosine recombinase XerD | VF |
| XNC1_RS12100 (XNC1_2890) | 2889034..2891507 | - | 2474 | Protein_2401 | DNA primase | - |
| XNC1_RS12105 (XNC1_2893) | 2891638..2891979 | + | 342 | WP_038251542.1 | helix-turn-helix transcriptional regulator | - |
| XNC1_RS12110 (XNC1_2894) | 2892066..2892386 | + | 321 | WP_013184691.1 | type I toxin-antitoxin system SymE family toxin | - |
| XNC1_RS12115 (XNC1_2895) | 2892456..2892908 | - | 453 | WP_013184692.1 | NADAR family protein | - |
| XNC1_RS12120 (XNC1_2896) | 2892905..2893243 | - | 339 | WP_013184693.1 | hypothetical protein | - |
| XNC1_RS23820 | 2893672..2893755 | - | 84 | Protein_2406 | RHS repeat protein | - |
| XNC1_RS12130 | 2893818..2894099 | - | 282 | WP_156148026.1 | hypothetical protein | - |
| XNC1_RS12140 | 2894395..2894620 | - | 226 | Protein_2408 | hypothetical protein | - |
| XNC1_RS12145 (XNC1_2901) | 2894638..2895666 | - | 1029 | WP_013184698.1 | IS91 family transposase ISAzo26 | Transposase |
| XNC1_RS23280 | 2895679..2895837 | + | 159 | WP_156148027.1 | hypothetical protein | - |
| XNC1_RS12150 (XNC1_2903) | 2895894..2898656 | - | 2763 | WP_013184700.1 | toprim domain-containing protein | - |
| XNC1_RS12155 (XNC1_2904) | 2898787..2899128 | + | 342 | WP_038251542.1 | helix-turn-helix transcriptional regulator | - |
| XNC1_RS12160 (XNC1_2905) | 2899215..2899535 | + | 321 | WP_013184701.1 | type I toxin-antitoxin system SymE family toxin | - |
| XNC1_RS12165 (XNC1_2906) | 2899617..2899844 | - | 228 | WP_013184702.1 | hypothetical protein | - |
| XNC1_RS12170 (XNC1_2907) | 2899846..2904433 | - | 4588 | Protein_2415 | RHS repeat protein | - |
| XNC1_RS12175 (XNC1_2909) | 2904575..2904931 | - | 357 | WP_010846820.1 | DUF4150 domain-containing protein | - |
| XNC1_RS12180 (XNC1_2910) | 2904924..2906141 | - | 1218 | WP_013184703.1 | DUF2169 domain-containing protein | - |
| XNC1_RS12185 (XNC1_2911) | 2906157..2908271 | - | 2115 | WP_013183865.1 | Actin cross-linking toxin VgrG1 | VF |
| XNC1_RS21520 | 2909006..2909440 | - | 435 | Protein_2419 | site-specific integrase | - |
| XNC1_RS12190 (XNC1_2913) | 2909470..2910231 | - | 762 | WP_013184705.1 | IS5 family transposase ISSod6 | Transposase |
| XNC1_RS12195 (XNC1_2914) | 2910384..2910842 | - | 459 | WP_013184706.1 | hypothetical protein | - |
| XNC1_RS12200 (XNC1_2915) | 2911041..2911481 | - | 441 | WP_013184707.1 | hypothetical protein | - |
| XNC1_RS12205 (XNC1_2916) | 2911559..2912497 | - | 939 | WP_013184708.1 | hypothetical protein | - |
| XNC1_RS12210 (XNC1_2917) | 2912494..2913822 | - | 1329 | Protein_2424 | hypothetical protein | VF |
| XNC1_RS12215 (XNC1_2918) | 2913923..2914876 | - | 954 | WP_013184710.1 | hypothetical protein | - |
| XNC1_RS12220 (XNC1_2919) | 2914873..2920665 | - | 5793 | WP_013184711.1 | type IV secretion protein Rhs | - |
| XNC1_RS12225 (XNC1_2920) | 2920726..2921220 | - | 495 | WP_013184712.1 | hypothetical protein | - |
| XNC1_RS23490 (XNC1_2921) | 2921670..2921804 | + | 135 | Protein_2428 | IS30 family transposase ISPlu1 | Transposase |
| XNC1_RS12230 (XNC1_2922) | 2921953..2922354 | + | 402 | WP_013184714.1 | hypothetical protein | - |
| XNC1_RS22935 (XNC1_2923) | 2922365..2923027 | + | 663 | WP_013184715.1 | hypothetical protein | - |
| XNC1_RS12240 (XNC1_2924) | 2923060..2923335 | - | 276 | Protein_2431 | IS200-IS605 family transposase ISCaa10 | Transposase |
| XNC1_RS12245 (XNC1_2925) | 2923364..2924934 | - | 1571 | Protein_2432 | IS66 family transposase ISCro1 | Transposase |
| XNC1_RS12250 (XNC1_2926) | 2924954..2925301 | - | 348 | WP_041573712.1 | IS66 family transposase ISCro1 | Transposase |
| XNC1_RS12255 (XNC1_2928) | 2925301..2925933 | - | 633 | WP_013184718.1 | IS66 family transposase ISCro1 | Transposase |
| XNC1_RS12260 (XNC1_2930) | 2926141..2927163 | + | 1023 | WP_013184720.1 | IS110 family transposase ISSde4 | Transposase |
| XNC1_RS22315 | 2927477..2927832 | + | 356 | Protein_2436 | hypothetical protein | - |
| XNC1_RS12265 (XNC1_2932) | 2928113..2932084 | + | 3972 | WP_143767681.1 | NERD domain-containing protein | - |
| XNC1_RS12270 (XNC1_2933) | 2932070..2933038 | - | 969 | WP_013184723.1 | IS110 family transposase IS621 | Transposase |
| XNC1_RS23285 (XNC1_2935) | 2933123..2933407 | + | 285 | WP_013184725.1 | hypothetical protein | - |
| XNC1_RS21540 | 2933460..2933618 | + | 159 | Protein_2440 | IS1595 family transposase | - |
| XNC1_RS12280 (XNC1_2936) | 2933812..2934159 | - | 348 | Protein_2441 | IS5 family transposase ISPlu14 | Transposase |
| XNC1_RS12285 (XNC1_2938) | 2934213..2934536 | + | 324 | WP_013183332.1 | IS630 family transposase ISSsu3 | Transposase |
| XNC1_RS12290 (XNC1_2939) | 2934568..2935044 | + | 477 | WP_197541260.1 | IS630 family transposase ISOt3 | Transposase |
| XNC1_RS12295 (XNC1_2940) | 2935061..2935993 | + | 933 | Protein_2444 | IS66 family transposase ISCro1 | Transposase |
| XNC1_RS21545 | 2936135..2937256 | + | 1122 | Protein_2445 | ISAs1 family transposase ISTha2 | Transposase |
| XNC1_RS12305 (XNC1_2944) | 2937618..2938154 | + | 537 | WP_013184731.1 | gluconokinase | - |
| XNC1_RS12310 (XNC1_2945) | 2938154..2939491 | + | 1338 | WP_010848884.1 | gluconate transporter | - |
| XNC1_RS12315 (XNC1_2946) | 2939582..2939866 | - | 285 | WP_010848883.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XNC1_RS12320 (XNC1_2947) | 2939856..2940107 | - | 252 | WP_010848882.1 | plasmid stabilization protein | - |
| XNC1_RS23760 (XNC1_2948) | 2940188..2940514 | - | 327 | WP_050986632.1 | hypothetical protein | - |
| XNC1_RS12330 (XNC1_2950) | 2940821..2941909 | - | 1089 | WP_013184732.1 | DUF459 domain-containing protein | - |
| XNC1_RS12335 (XNC1_2951) | 2941896..2943313 | - | 1418 | Protein_2452 | MBOAT family protein | - |
| XNC1_RS12340 (XNC1_2954) | 2943506..2944282 | - | 777 | WP_010848877.1 | protein bax | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xenorhabdus nematophila AN6/1 | Integrative and Conjugative Element | TA285555 | NZ_LN681227 | 2878955..2939670 | 0 |