MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 36585 bp
Accession: NC_014228 Location: 2312367..2348951 Organism: Xenorhabdus nematophila ATCC 19061 Replicon: chromosome
Accession: NC_014228 Location: 2312367..2348951 Organism: Xenorhabdus nematophila ATCC 19061 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XNC1_RS09935 (XNC1_2372) | 2307391..2307969 | - | 579 | WP_013141546.1 | type IV conjugative transfer system lipoprotein TraV | - |
| XNC1_RS09940 (XNC1_2374) | 2307966..2309279 | - | 1314 | WP_041573865.1 | conjugal transfer protein TraB | - |
| XNC1_RS09945 (XNC1_2375) | 2309279..2310196 | - | 918 | WP_013141544.1 | type-F conjugative transfer system secretin TraK | - |
| XNC1_RS09950 (XNC1_2376) | 2310180..2310473 | - | 294 | Protein_1972 | pilus assembly protein | - |
| XNC1_RS23640 | 2310539..2310682 | - | 144 | WP_021326607.1 | hypothetical protein | - |
| XNC1_RS09955 (XNC1_2377) | 2310863..2311525 | - | 663 | WP_013141542.1 | hypothetical protein | - |
| XNC1_RS09960 (XNC1_2378) | 2311525..2311902 | - | 378 | WP_013141541.1 | hypothetical protein | - |
| XNC1_RS09965 (XNC1_2379) | 2311912..2312358 | - | 447 | WP_013184411.1 | hypothetical protein | - |
| XNC1_RS22880 | 2312367..2312771 | - | 405 | Protein_1977 | DUF4400 domain-containing protein | - |
| XNC1_RS23745 | 2312757..2313053 | - | 297 | Protein_1978 | type IV secretion system DNA-binding domain-containing protein | - |
| XNC1_RS09975 (XNC1_2381) | 2313166..2314206 | + | 1041 | WP_013141539.1 | IS481 family transposase ISVvu4 | Transposase |
| XNC1_RS09980 (XNC1_2382) | 2314240..2314770 | - | 531 | WP_013141538.1 | hypothetical protein | - |
| XNC1_RS09985 | 2314767..2316630 | - | 1864 | Protein_1981 | TraI domain-containing protein | - |
| XNC1_RS09990 (XNC1_2385) | 2316797..2317414 | + | 618 | WP_013184413.1 | hypothetical protein | - |
| XNC1_RS09995 (XNC1_2386) | 2317396..2317629 | + | 234 | WP_013184414.1 | hypothetical protein | - |
| XNC1_RS10000 (XNC1_2387) | 2317629..2319815 | + | 2187 | WP_013184415.1 | DNA topoisomerase 3 | - |
| XNC1_RS10005 (XNC1_2389) | 2319873..2320172 | + | 300 | Protein_1985 | IS630 family transposase ISSsu3 | Transposase |
| XNC1_RS10010 (XNC1_2390) | 2320808..2321086 | + | 279 | WP_113967504.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| XNC1_RS10015 (XNC1_2391) | 2321083..2321439 | + | 357 | WP_013184418.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| XNC1_RS10020 (XNC1_2393) | 2321885..2322595 | - | 711 | WP_013184420.1 | portal protein | - |
| XNC1_RS10025 | 2322601..2322993 | - | 393 | Protein_1989 | transposase | - |
| XNC1_RS10030 (XNC1_2395) | 2323152..2323898 | + | 747 | Protein_1990 | IS630 family transposase ISPlu8 | Transposase |
| XNC1_RS10035 (XNC1_2396) | 2323900..2324949 | + | 1050 | Protein_1991 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| XNC1_RS10040 (XNC1_2397) | 2325034..2326056 | + | 1023 | WP_010845954.1 | IS110 family transposase IS1618 | Transposase |
| XNC1_RS10045 (XNC1_2398) | 2326207..2326530 | + | 324 | WP_013184424.1 | IS630 family transposase ISSsu3 | Transposase |
| XNC1_RS10050 (XNC1_2400) | 2326562..2327038 | + | 477 | WP_197541258.1 | IS630 family transposase ISOt3 | Transposase |
| XNC1_RS21410 (XNC1_2401) | 2327255..2329641 | + | 2387 | Protein_1995 | Tn3 family transposase ISKox2 | Transposase |
| XNC1_RS10060 (XNC1_2403) | 2329642..2330175 | - | 534 | WP_045107667.1 | hypothetical protein | VF |
| XNC1_RS10065 (XNC1_2404) | 2330757..2332700 | + | 1944 | WP_013184428.1 | exoribonuclease II | - |
| XNC1_RS10070 | 2332838..2333773 | + | 936 | Protein_1998 | class A beta-lactamase | - |
| XNC1_RS10075 (XNC1_2407) | 2333835..2334311 | - | 477 | WP_197541259.1 | IS630 family transposase ISOt3 | Transposase |
| XNC1_RS21415 (XNC1_2408) | 2334359..2334667 | - | 309 | WP_013184432.1 | IS630 transposase-related protein | - |
| XNC1_RS10080 (XNC1_2409) | 2334674..2334997 | - | 324 | WP_010845962.1 | stress response translation initiation inhibitor YciH | - |
| XNC1_RS10085 (XNC1_2410) | 2334990..2335715 | - | 726 | WP_013184433.1 | orotidine-5'-phosphate decarboxylase | - |
| XNC1_RS10090 (XNC1_2412) | 2335884..2337053 | - | 1170 | WP_010845965.1 | lipopolysaccharide assembly protein LapB | - |
| XNC1_RS10095 (XNC1_2413) | 2337060..2337374 | - | 315 | WP_010845966.1 | LapA family protein | - |
| XNC1_RS10105 (XNC1_2414) | 2337983..2338579 | + | 597 | WP_013184434.1 | GTP cyclohydrolase II | - |
| XNC1_RS10110 (XNC1_2415) | 2338685..2341351 | - | 2667 | WP_173363111.1 | aconitate hydratase AcnA | - |
| XNC1_RS10115 (XNC1_2416) | 2341688..2342509 | + | 822 | WP_010845970.1 | hypothetical protein | - |
| XNC1_RS10120 (XNC1_2417) | 2342631..2343605 | - | 975 | WP_010845971.1 | HTH-type transcriptional regulator CysB | - |
| XNC1_RS10125 (XNC1_2419) | 2343951..2346548 | - | 2598 | WP_013184437.1 | type I DNA topoisomerase | - |
| XNC1_RS22270 | 2346988..2347752 | + | 765 | Protein_2010 | IS5 family transposase | - |
| XNC1_RS10140 (XNC1_2423) | 2347911..2348951 | - | 1041 | WP_013184439.1 | IS481 family transposase ISVvu4 | Transposase |
| XNC1_RS10145 (XNC1_2424) | 2349155..2350201 | - | 1047 | WP_010845977.1 | protease SohB | - |
| XNC1_RS10150 (XNC1_2426) | 2350441..2351205 | + | 765 | WP_010845978.1 | YciK family oxidoreductase | - |
| XNC1_RS10155 (XNC1_2427) | 2351205..2351801 | + | 597 | WP_013184441.1 | cob(I)yrinic acid a,c-diamide adenosyltransferase | - |
| XNC1_RS10160 (XNC1_2428) | 2351860..2352783 | - | 924 | WP_010845980.1 | 23S rRNA pseudouridine(2605) synthase RluB | - |
| XNC1_RS10165 (XNC1_2429) | 2352846..2353466 | - | 621 | WP_013184442.1 | threonylcarbamoyl-AMP synthase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xenorhabdus nematophila AN6/1 | Integrative and Conjugative Element | TA285554 | NZ_LN681227 | 2312102..2348646 | 0 |