MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 95614 bp
Accession: NC_014006 Location: 2934452..3030065 Organism: Sphingobium japonicum UT26S Replicon: chromosome
Accession: NC_014006 Location: 2934452..3030065 Organism: Sphingobium japonicum UT26S Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SJA_RS13940 () | 2929476..2929622 | + | 147 | WP_013041059.1 | endonuclease | - |
| SJA_RS13945 () | 2930330..2930845 | + | 516 | WP_007687448.1 | 50S ribosomal protein L10 | - |
| SJA_RS13950 () | 2930935..2931315 | + | 381 | WP_013041061.1 | 50S ribosomal protein L7/L12 | - |
| SJA_RS13955 () | 2931534..2932427 | - | 894 | WP_013041062.1 | N-formylglutamate amidohydrolase | - |
| SJA_RS13960 () | 2932578..2932955 | + | 378 | WP_007687442.1 | response regulator | - |
| SJA_RS13965 () | 2932959..2934257 | - | 1299 | WP_193377939.1 | dicarboxylate/amino acid:cation symporter | - |
| SJA_RS13975 () | 2934785..2935027 | - | 243 | WP_065846227.1 | hypothetical protein | - |
| SJA_RS13980 () | 2935029..2936066 | + | 1038 | WP_013041065.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| SJA_RS21330 () | 2936216..2936413 | + | 198 | WP_013041066.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| SJA_RS13985 () | 2936410..2936781 | + | 372 | WP_013041067.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| SJA_RS13990 () | 2937186..2939039 | - | 1854 | WP_013041068.1 | HipA domain-containing protein | - |
| SJA_RS22015 () | 2939167..2939319 | - | 153 | WP_139111437.1 | IS110 family transposase | - |
| SJA_RS13995 () | 2939553..2939894 | + | 342 | WP_049775108.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| SJA_RS14000 () | 2940093..2940476 | - | 384 | WP_161601887.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| SJA_RS14005 () | 2940865..2941296 | + | 432 | WP_013041074.1 | IS91 family transposase ISAzo26 | Transposase |
| SJA_RS14010 () | 2941513..2942547 | - | 1035 | WP_013041075.1 | IS110 family transposase ISMmg1 | Transposase |
| SJA_RS22020 () | 2942658..2942909 | + | 252 | WP_148225565.1 | hypothetical protein | - |
| SJA_RS14015 () | 2942921..2944033 | + | 1113 | WP_013041078.1 | Fic family protein | - |
| SJA_RS14020 () | 2944329..2944895 | + | 567 | WP_148225566.1 | HAD family hydrolase | - |
| SJA_RS14025 () | 2944921..2945226 | - | 306 | WP_013041080.1 | type II toxin-antitoxin system VapC family toxin | - |
| SJA_RS21340 () | 2945566..2945797 | + | 232 | Protein_2807 | IS21 family transposase | - |
| SJA_RS21345 () | 2945759..2946055 | - | 297 | WP_148225567.1 | hypothetical protein | - |
| SJA_RS14035 () | 2946220..2947239 | + | 1020 | WP_013041083.1 | putative glycosyltransferase | VF |
| SJA_RS14040 () | 2947232..2947921 | + | 690 | WP_013041084.1 | class I SAM-dependent methyltransferase | - |
| SJA_RS14045 () | 2947938..2949860 | + | 1923 | WP_013041085.1 | GtrA family protein | - |
| SJA_RS14050 () | 2949857..2951416 | + | 1560 | WP_161601888.1 | glycosyltransferase family 39 protein | - |
| SJA_RS14055 () | 2951594..2951821 | - | 228 | WP_013041087.1 | DUF2274 domain-containing protein | - |
| SJA_RS14060 () | 2951831..2953093 | - | 1263 | WP_013041088.1 | TrbI/VirB10 family protein | - |
| SJA_RS14065 () | 2953090..2953947 | - | 858 | WP_013041089.1 | P-type conjugative transfer protein TrbG | - |
| SJA_RS14070 () | 2953944..2954720 | - | 777 | WP_013041090.1 | conjugal transfer protein TrbF | - |
| SJA_RS14075 () | 2954722..2956017 | - | 1296 | WP_013041091.1 | P-type conjugative transfer protein TrbL | - |
| SJA_RS14080 () | 2956143..2956892 | - | 750 | WP_013041092.1 | P-type conjugative transfer protein TrbJ | - |
| SJA_RS14085 () | 2956894..2959344 | - | 2451 | WP_013041093.1 | conjugal transfer protein TrbE | - |
| SJA_RS14090 () | 2959338..2959598 | - | 261 | WP_013041094.1 | VirB3 family type IV secretion system protein | - |
| SJA_RS14095 () | 2959595..2959942 | - | 348 | WP_197532066.1 | TrbC/VirB2 family protein | - |
| SJA_RS14100 () | 2959939..2960895 | - | 957 | WP_049775175.1 | Type IV secretion system protein VirB11 | VF |
| SJA_RS14105 () | 2960958..2961374 | - | 417 | WP_013041097.1 | IS3 family transposase ISVa4 | Transposase |
| SJA_RS14110 () | 2961371..2963392 | - | 2022 | WP_013041098.1 | Conjugal transfer protein TraG | VF |
| SJA_RS14115 () | 2963538..2964458 | - | 921 | WP_041386066.1 | HEPN domain-containing protein | - |
| SJA_RS14120 () | 2964640..2964908 | + | 269 | Protein_2826 | ribbon-helix-helix protein, CopG family | - |
| SJA_RS14125 () | 2965034..2967046 | - | 2013 | WP_013041101.1 | relaxase/mobilization nuclease and DUF3363 domain-containing protein | - |
| SJA_RS22630 () | 2967426..2967572 | - | 147 | WP_167532622.1 | hypothetical protein | - |
| SJA_RS14130 () | 2967845..2968533 | - | 689 | Protein_2829 | Secreted effector protein PipB2 | VF |
| SJA_RS14135 () | 2968627..2969277 | - | 651 | WP_013041105.1 | lytic transglycosylase domain-containing protein | - |
| SJA_RS14140 () | 2969265..2969837 | - | 573 | WP_013041106.1 | signal peptidase I | - |
| SJA_RS14145 () | 2969834..2970091 | - | 258 | WP_013041107.1 | helix-turn-helix domain-containing protein | - |
| SJA_RS14150 () | 2970267..2970587 | - | 321 | WP_013041108.1 | DUF736 domain-containing protein | - |
| SJA_RS14155 () | 2971461..2971796 | - | 336 | WP_013041111.1 | endoribonuclease MazF | Toxin Detail |
| SJA_RS14160 () | 2971796..2972038 | - | 243 | WP_013041112.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| SJA_RS14165 () | 2972163..2972372 | - | 210 | WP_013041113.1 | hypothetical protein | - |
| SJA_RS14170 () | 2972553..2974427 | - | 1875 | WP_013041114.1 | ParB N-terminal domain-containing protein | - |
| SJA_RS14175 () | 2974544..2974945 | - | 402 | WP_013041115.1 | DUF2958 domain-containing protein | - |
| SJA_RS14180 () | 2974942..2975256 | - | 315 | WP_148225568.1 | antirestriction protein ArdC | - |
| SJA_RS14185 () | 2975253..2976155 | - | 903 | WP_013039035.1 | DUF1738 domain-containing protein | - |
| SJA_RS14190 () | 2976200..2978425 | - | 2226 | WP_013039034.1 | hypothetical protein ; Integrase | Integrase |
| SJA_RS14195 () | 2978422..2980209 | - | 1788 | WP_013039033.1 | hypothetical protein | - |
| SJA_RS14200 () | 2980206..2981597 | - | 1392 | WP_013039032.1 | IS91 family transposase ISAzo26 | Transposase |
| SJA_RS14205 () | 2981751..2982599 | - | 849 | WP_013041117.1 | DUF1738 domain-containing protein | - |
| SJA_RS20890 () | 2983062..2983715 | - | 654 | WP_161601889.1 | DUF2285 domain-containing protein | - |
| SJA_RS14220 () | 2984109..2984855 | + | 747 | WP_013041120.1 | LuxR family transcriptional regulator | - |
| SJA_RS14225 () | 2984912..2985511 | + | 600 | WP_013041121.1 | autoinducer synthase | - |
| SJA_RS14230 () | 2985528..2986394 | + | 867 | WP_041386071.1 | phytanoyl-CoA dioxygenase family protein | - |
| SJA_RS14235 () | 2986455..2987006 | + | 552 | WP_013041123.1 | GntR family transcriptional regulator | - |
| SJA_RS22030 () | 2987172..2987291 | + | 120 | WP_126516753.1 | benenodin family lasso peptide | - |
| SJA_RS20895 () | 2987345..2988001 | + | 657 | WP_013041124.1 | lasso peptide biosynthesis B2 protein | - |
| SJA_RS14245 () | 2988001..2989752 | + | 1752 | WP_013041125.1 | asparagine synthase C-terminal domain-containing protein | - |
| SJA_RS14250 () | 2989749..2991854 | - | 2106 | WP_148225569.1 | Atxe2 family lasso peptide isopeptidase | - |
| SJA_RS14255 () | 2991860..2994430 | - | 2571 | WP_013041127.1 | Colicin I receptor | VF |
| SJA_RS14260 () | 2994508..2995515 | - | 1008 | WP_013041128.1 | FecR domain-containing protein | - |
| SJA_RS14265 () | 2995508..2996089 | - | 582 | WP_013041129.1 | sigma-70 family RNA polymerase sigma factor | - |
| SJA_RS14270 () | 2997266..2998303 | + | 1038 | WP_013041132.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| SJA_RS14275 () | 2998366..2999229 | - | 864 | WP_013041133.1 | class I mannose-6-phosphate isomerase | - |
| SJA_RS14280 () | 2999590..3000672 | + | 1083 | WP_041386589.1 | Alginate biosynthesis protein AlgA | VF |
| SJA_RS14285 () | 3000702..3002195 | + | 1494 | WP_013041135.1 | Phosphoglucosamine mutase | VF |
| SJA_RS14290 () | 3002210..3003451 | - | 1242 | WP_013041136.1 | glycosyltransferase family 4 protein | - |
| SJA_RS14295 () | 3003484..3004668 | - | 1185 | WP_197532067.1 | hypothetical protein | VF |
| SJA_RS22385 () | 3004734..3004871 | + | 138 | WP_013041138.1 | hypothetical protein | - |
| SJA_RS14300 () | 3005041..3006150 | + | 1110 | WP_041386591.1 | hypothetical protein | VF |
| SJA_RS14305 () | 3006158..3006958 | + | 801 | WP_013041140.1 | Polysialic acid transport protein KpsM | VF |
| SJA_RS21350 () | 3006955..3007614 | + | 660 | WP_081440667.1 | ABC transporter ATP-binding protein | - |
| SJA_RS22035 () | 3007617..3007753 | - | 137 | Protein_2867 | IS5 family transposase ISSsp126 | Transposase |
| SJA_RS20900 () | 3007930..3010317 | + | 2388 | WP_081440668.1 | FkbM family methyltransferase | - |
| SJA_RS14320 () | 3010325..3010969 | + | 645 | WP_049775112.1 | acetyltransferase | - |
| SJA_RS14325 () | 3011020..3012003 | + | 984 | WP_197532068.1 | glycosyltransferase family 4 protein | - |
| SJA_RS14330 () | 3012000..3013043 | + | 1044 | WP_013041146.1 | glycosyltransferase family 4 protein | - |
| SJA_RS14335 () | 3013043..3014344 | + | 1302 | WP_013041147.1 | glycosyltransferase family 4 protein | - |
| SJA_RS14340 () | 3014409..3015494 | + | 1086 | WP_154651062.1 | GDP-perosamine synthase | VF |
| SJA_RS14345 () | 3015515..3016471 | + | 957 | Protein_2874 | GDP-mannose 4,6-dehydratase | VF |
| SJA_RS14350 () | 3016543..3017907 | + | 1365 | WP_013039168.1 | transposase | - |
| SJA_RS21355 () | 3018097..3019002 | + | 906 | WP_148225570.1 | GDP-mannose 4,6-dehydratase | - |
| SJA_RS21360 () | 3019248..3020066 | + | 819 | WP_081440669.1 | sulfotransferase family 2 domain-containing protein | - |
| SJA_RS22040 () | 3020250..3020414 | - | 165 | Protein_2878 | transposase | - |
| SJA_RS22045 () | 3020489..3020620 | + | 132 | Protein_2879 | IS5 family transposase ISSsp126 | Transposase |
| SJA_RS14360 () | 3020760..3022022 | + | 1263 | WP_013041153.1 | IS21 family transposase ISMex13 | Transposase |
| SJA_RS14365 () | 3022019..3022879 | + | 861 | WP_013041154.1 | IS21 family transposase ISMex13 | Transposase |
| SJA_RS14370 () | 3022958..3023923 | + | 966 | Protein_2882 | IS5 family transposase ISSsp126 | Transposase |
| SJA_RS21370 () | 3024103..3025836 | - | 1734 | WP_013041156.1 | glycosyltransferase family 4 protein | - |
| SJA_RS22050 () | 3025833..3026954 | - | 1122 | WP_148225571.1 | glycosyltransferase | - |
| SJA_RS21375 () | 3027075..3027491 | - | 417 | WP_081440671.1 | DUF4214 domain-containing protein | - |
| SJA_RS14380 () | 3027919..3028305 | - | 387 | Protein_2886 | IS256 family transposase ISNha9 | Transposase |
| SJA_RS14385 () | 3028363..3028605 | - | 243 | Protein_2887 | IS256 family transposase ISSpwi2 | Transposase |
| SJA_RS22055 () | 3028793..3028978 | - | 186 | Protein_2888 | IS5/IS1182 family transposase | - |
| SJA_RS22390 () | 3029006..3029179 | + | 174 | WP_013041162.1 | hypothetical protein | - |
| SJA_RS22395 () | 3029312..3029455 | - | 144 | WP_013041163.1 | hypothetical protein | - |
| SJA_RS14395 () | 3029756..3030046 | - | 291 | WP_148225572.1 | hypothetical protein | - |
| SJA_RS14400 () | 3030100..3032430 | - | 2331 | WP_041386079.1 | GH92 family glycosyl hydrolase | - |
| SJA_RS14405 () | 3032670..3033575 | + | 906 | WP_013041166.1 | ROK family protein | - |
| SJA_RS14410 () | 3033568..3033786 | - | 219 | WP_013041167.1 | hypothetical protein | - |
| SJA_RS14415 () | 3033779..3033997 | - | 219 | WP_013041168.1 | hypothetical protein | - |
| SJA_RS14420 () | 3034019..3034837 | + | 819 | WP_013041169.1 | class I mannose-6-phosphate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|