MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 29564 bp
Accession: NC_012917 Location: 983642..1013205 Organism: Pectobacterium carotovorum subsp. carotovorum PC1 Replicon: chromosome
Accession: NC_012917 Location: 983642..1013205 Organism: Pectobacterium carotovorum subsp. carotovorum PC1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PC1_RS04210 () | 979565..979987 | + | 423 | WP_012773533.1 | MarR family transcriptional regulator | - |
| PC1_RS04215 () | 980121..981308 | - | 1188 | WP_012773534.1 | MFS transporter | - |
| PC1_RS04220 () | 981424..982380 | + | 957 | WP_012773535.1 | AraC family transcriptional regulator | - |
| PC1_RS04225 () | 982724..983203 | + | 480 | WP_012773536.1 | hypothetical protein | - |
| PC1_RS04230 () | 983379..983579 | - | 201 | Protein_831 | hypothetical protein | - |
| PC1_RS04235 () | 983896..984120 | + | 225 | WP_043881717.1 | DUF1778 domain-containing protein | - |
| PC1_RS04240 () | 984240..985364 | + | 1125 | WP_012773539.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PC1_RS04245 () | 985617..987593 | + | 1977 | WP_012773540.1 | site-specific DNA-methyltransferase | - |
| PC1_RS04250 () | 987593..990589 | + | 2997 | WP_012773541.1 | DEAD/DEAH box helicase family protein | - |
| PC1_RS04255 () | 990685..993318 | - | 2634 | WP_012773542.1 | DEAD/DEAH box helicase family protein | - |
| PC1_RS04260 () | 993309..995069 | - | 1761 | WP_012773543.1 | site-specific DNA-methyltransferase | - |
| PC1_RS04265 () | 995673..995978 | - | 306 | WP_012773545.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| PC1_RS04270 () | 995981..996199 | - | 219 | WP_012773546.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| PC1_RS04275 () | 996258..997001 | - | 744 | WP_012773547.1 | hypothetical protein | - |
| PC1_RS04280 () | 997746..998087 | - | 342 | WP_012773548.1 | hypothetical protein | - |
| PC1_RS04285 () | 998273..998467 | + | 195 | WP_012773549.1 | DUF3950 domain-containing protein | - |
| PC1_RS04290 () | 998562..999821 | - | 1260 | WP_012773550.1 | Prophage integrase IntS ; Integrase | Integrase |
| PC1_RS04295 () | 1000254..1000970 | - | 717 | WP_012773552.1 | M48 family metallopeptidase | - |
| PC1_RS04300 () | 1000970..1004065 | - | 3096 | WP_012773553.1 | HsdR family type I site-specific deoxyribonuclease | - |
| PC1_RS04305 () | 1004086..1005153 | - | 1068 | WP_012773554.1 | macro domain-containing protein | Antitoxin Detail |
| PC1_RS04310 () | 1005150..1005806 | - | 657 | WP_012773555.1 | DUF4433 domain-containing protein | Toxin Detail |
| PC1_RS04315 () | 1005819..1007060 | - | 1242 | WP_012773556.1 | restriction endonuclease subunit S | - |
| PC1_RS04320 () | 1007060..1009504 | - | 2445 | WP_012773557.1 | type I restriction-modification system subunit M | - |
| PC1_RS04325 () | 1009545..1009784 | - | 240 | WP_012773558.1 | hypothetical protein | - |
| PC1_RS22465 () | 1009861..1010292 | + | 432 | WP_196219332.1 | ash family protein | - |
| PC1_RS04330 () | 1010184..1010645 | + | 462 | WP_012773559.1 | hypothetical protein | - |
| PC1_RS04335 () | 1010642..1010863 | + | 222 | WP_012773560.1 | helix-turn-helix domain-containing protein | - |
| PC1_RS04340 () | 1011767..1013026 | - | 1260 | WP_012773562.1 | Prophage integrase IntA ; Integrase | Integrase |
| PC1_RS04350 () | 1013944..1016097 | + | 2154 | WP_012773563.1 | ornithine decarboxylase | - |
| PC1_RS04355 () | 1016157..1017608 | - | 1452 | WP_012773564.1 | L-asparagine permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|