MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 55414 bp
Accession: NC_012124 Location: 1..55414 Organism: Salmonella enterica subsp. enterica serovar Paratyphi C strain Replicon: plasmid pSPCV
Accession: NC_012124 Location: 1..55414 Organism: Salmonella enterica subsp. enterica serovar Paratyphi C strain Replicon: plasmid pSPCV
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SPC_RS23620 () | 1..894 | + | 894 | WP_000346689.1 | virulence genes transcriptional activator SpvR | - |
| SPC_RS23625 () | 1068..1232 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| SPC_RS23630 () | 1406..2173 | + | 768 | WP_001541537.1 | virulence protein SpvA | - |
| SPC_RS26640 () | 2136..2303 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| SPC_RS23635 () | 2355..4130 | + | 1776 | WP_015899537.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| SPC_RS23640 () | 4411..5130 | + | 720 | WP_001122239.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| SPC_RS23645 () | 5391..6041 | + | 651 | WP_015899538.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| SPC_RS23650 () | 6168..6593 | - | 426 | WP_000064919.1 | IS200/IS605 family transposase | - |
| SPC_RS23655 () | 6650..7000 | + | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| SPC_RS23660 () | 7067..7626 | - | 560 | Protein_9 | inverse autotransporter beta domain-containing protein | - |
| SPC_RS23670 () | 8346..8831 | - | 486 | WP_000905606.1 | membrane protein | - |
| SPC_RS23675 () | 8825..9334 | - | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| SPC_RS23680 () | 9338..10051 | - | 714 | Protein_12 | EAL domain-containing protein | - |
| SPC_RS23685 () | 10060..10842 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| SPC_RS23690 () | 10855..11397 | - | 543 | WP_000198609.1 | hypothetical protein | - |
| SPC_RS23695 () | 11394..11684 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| SPC_RS23700 () | 11686..11991 | - | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| SPC_RS23705 () | 11993..12211 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| SPC_RS23710 () | 12886..13407 | + | 522 | WP_077906344.1 | hypothetical protein | - |
| SPC_RS26645 () | 13451..13879 | - | 429 | Protein_19 | hypothetical protein | - |
| SPC_RS25960 () | 13891..14186 | + | 296 | Protein_20 | cytoplasmic protein | - |
| SPC_RS23725 () | 14680..15669 | + | 990 | WP_000461383.1 | RepB family plasmid replication initiator protein | - |
| SPC_RS25475 () | 15787..15948 | - | 162 | WP_001541548.1 | hypothetical protein | - |
| SPC_RS23730 () | 16001..16387 | - | 387 | WP_000751876.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| SPC_RS26510 () | 16754..17065 | - | 312 | WP_015899541.1 | hypothetical protein | - |
| SPC_RS23740 () | 17094..17396 | + | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| SPC_RS23745 () | 17671..18189 | + | 519 | WP_000748207.1 | major pilin PefA | - |
| SPC_RS23750 () | 18416..20824 | + | 2409 | WP_000007887.1 | outer membrane usher protein PefC | - |
| SPC_RS23755 () | 20817..21509 | + | 693 | WP_001038509.1 | fimbrial chaperone PefD | - |
| SPC_RS23760 () | 21506..22084 | + | 579 | WP_000085743.1 | hypothetical protein | - |
| SPC_RS23765 () | 22267..23121 | + | 855 | WP_024131758.1 | hypothetical protein | - |
| SPC_RS23770 () | 23382..23594 | + | 213 | WP_000004290.1 | transcriptional regulator PefI | - |
| SPC_RS23775 () | 23579..23914 | + | 336 | WP_015899543.1 | helix-turn-helix transcriptional regulator | - |
| SPC_RS23780 () | 24117..24515 | + | 399 | Protein_33 | YjiK family protein | - |
| SPC_RS23785 () | 25440..26321 | - | 882 | WP_001676666.1 | incFII family plasmid replication initiator RepA | - |
| SPC_RS23790 () | 26302..26379 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| SPC_RS23800 () | 26629..26895 | - | 267 | WP_016710725.1 | replication regulatory protein RepA | - |
| SPC_RS23805 () | 27226..27678 | - | 453 | WP_000477660.1 | hypothetical protein | - |
| SPC_RS23810 () | 27795..28358 | - | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| SPC_RS23815 () | 28413..29153 | - | 741 | WP_000177630.1 | conjugal transfer pilus acetylase TraX | - |
| SPC_RS23820 () | 29173..34355 | - | 5183 | Protein_40 | conjugative transfer relaxase/helicase TraI | - |
| SPC_RS23825 () | 34437..34664 | + | 228 | WP_000450263.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| SPC_RS23830 () | 34664..35062 | + | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| SPC_RS23835 () | 35071..37314 | - | 2244 | WP_000009314.1 | type IV conjugative transfer system coupling protein TraD | - |
| SPC_RS23840 () | 37686..38417 | - | 732 | WP_000782436.1 | complement resistance protein TraT | - |
| SPC_RS23950 () | 38720..38962 | - | 243 | WP_000632200.1 | hypothetical protein | - |
| SPC_RS23850 () | 38959..39660 | - | 702 | WP_148201696.1 | hypothetical protein | - |
| SPC_RS23855 () | 39962..40384 | + | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| SPC_RS23860 () | 40384..41658 | + | 1275 | WP_000457543.1 | Y-family DNA polymerase | - |
| SPC_RS23865 () | 41740..42714 | - | 975 | WP_000064275.1 | ParB/RepB/Spo0J family partition protein | - |
| SPC_RS23870 () | 42714..43919 | - | 1206 | WP_000427676.1 | AAA family ATPase | - |
| SPC_RS23875 () | 44334..45275 | + | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| SPC_RS23880 () | 45307..45873 | - | 567 | WP_001541562.1 | DUF2913 family protein | - |
| SPC_RS23885 () | 45930..46265 | - | 336 | WP_001527010.1 | hypothetical protein | - |
| SPC_RS23890 () | 46449..46865 | - | 417 | WP_041030921.1 | hypothetical protein | - |
| SPC_RS23895 () | 46951..48066 | - | 1116 | WP_001247115.1 | DNA-binding protein | - |
| SPC_RS23900 () | 48511..48813 | + | 303 | WP_014411932.1 | hypothetical protein | - |
| SPC_RS23905 () | 49468..50208 | + | 741 | WP_001541566.1 | carbonic anhydrase | - |
| SPC_RS23910 () | 50415..50975 | + | 561 | WP_001240330.1 | recombinase family protein | - |
| SPC_RS23915 () | 50959..52623 | + | 1665 | WP_000098782.1 | IS481 family transposase | - |
| SPC_RS23920 () | 52556..53581 | + | 1026 | WP_077906346.1 | ExeA family protein | - |
| SPC_RS23925 () | 53770..54807 | - | 1038 | WP_001121399.1 | IS630 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|