MGE detailed information
MGE type: Conjugative plasmid MGE length: 133853 bp
Accession: NC_011747 Location: 1..133853 Organism: Escherichia coli S88 Replicon: plasmid pECOS88
Accession: NC_011747 Location: 1..133853 Organism: Escherichia coli S88 Replicon: plasmid pECOS88
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECS88_RS00005 () | 132..872 | + | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| ECS88_RS00010 () | 1157..2134 | - | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| ECS88_RS00020 () | 2880..3203 | + | 324 | Protein_3 | IS21 family transposase IS21 | Transposase |
| ECS88_RS27595 () | 3205..3309 | + | 105 | Protein_4 | AAA family ATPase | - |
| ECS88_RS00030 () | 3370..3883 | + | 514 | Protein_5 | DUF4113 domain-containing protein | - |
| ECS88_RS00035 () | 4063..4760 | - | 698 | Protein_6 | IS1 family transposase IS1S | Transposase |
| ECS88_RS00050 () | 5285..7486 | - | 2202 | WP_000973517.1 | Ferric aerobactin receptor | VF |
| ECS88_RS00055 () | 7568..8845 | - | 1278 | WP_000750130.1 | L-lysine N6-monooxygenase | VF |
| ECS88_RS00060 () | 8842..10584 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| ECS88_RS00065 () | 10584..11531 | - | 948 | WP_000011907.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| ECS88_RS00070 () | 11532..13256 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| ECS88_RS00075 () | 13392..14585 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| ECS88_RS00080 () | 14965..15345 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| ECS88_RS00090 () | 15686..16099 | - | 414 | Protein_14 | phosphopyruvate hydratase | - |
| ECS88_RS00095 () | 16097..16354 | + | 258 | Protein_15 | Tn3 family transposase | - |
| ECS88_RS00100 () | 16588..17445 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| ECS88_RS00105 () | 17442..18299 | - | 858 | WP_000992805.1 | Manganese transport system membrane protein MntB | ARG |
| ECS88_RS00110 () | 18296..19123 | - | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| ECS88_RS00115 () | 19123..20037 | - | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| ECS88_RS00130 () | 20393..21090 | + | 698 | Protein_20 | IS1 family transposase | - |
| ECS88_RS00135 () | 21101..21763 | - | 663 | WP_000163251.1 | hypothetical protein | - |
| ECS88_RS00145 () | 22203..22682 | - | 480 | WP_000190053.1 | hypothetical protein | - |
| ECS88_RS00150 () | 22800..23249 | + | 450 | WP_000238252.1 | hypothetical protein | - |
| ECS88_RS00155 () | 23866..25368 | + | 1503 | WP_000715081.1 | hypothetical protein | - |
| ECS88_RS00160 () | 25594..25785 | + | 192 | WP_000925960.1 | hypothetical protein | - |
| ECS88_RS00170 () | 27393..28090 | + | 698 | Protein_26 | IS1 family transposase IS1S | Transposase |
| ECS88_RS00175 () | 28390..29556 | + | 1167 | WP_001238646.1 | Sporulation initiation inhibitor protein Soj | VF |
| ECS88_RS00180 () | 29556..30527 | + | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| ECS88_RS27700 () | 31253..31591 | + | 339 | WP_001513511.1 | hypothetical protein | - |
| ECS88_RS00195 () | 31660..32235 | + | 576 | WP_000343071.1 | hypothetical protein | - |
| ECS88_RS00200 () | 32248..32460 | + | 213 | WP_000092896.1 | hypothetical protein | - |
| ECS88_RS00205 () | 32721..33692 | - | 972 | WP_000082154.1 | IS110 family transposase ISEc32 | Transposase |
| ECS88_RS00215 () | 34217..34519 | + | 303 | WP_072256028.1 | antirestriction protein | - |
| ECS88_RS00220 () | 34519..34980 | + | 462 | WP_042007484.1 | DUF1380 family protein | - |
| ECS88_RS00225 () | 34980..35162 | + | 183 | WP_001027505.1 | hypothetical protein | - |
| ECS88_RS27705 () | 35150..35478 | - | 329 | Protein_36 | pilus assembly protein | - |
| ECS88_RS00245 () | 36156..36386 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| ECS88_RS00250 () | 36438..37799 | + | 1362 | WP_000170680.1 | DUF3560 domain-containing protein | - |
| ECS88_RS00255 () | 37847..38410 | + | 564 | WP_001332335.1 | class I SAM-dependent methyltransferase | - |
| ECS88_RS00265 () | 38496..38915 | - | 420 | WP_015056142.1 | hypothetical protein | - |
| ECS88_RS00275 () | 39216..39848 | + | 633 | WP_000290818.1 | single-stranded DNA-binding protein | - |
| ECS88_RS00280 () | 39811..40044 | + | 234 | WP_000005988.1 | DUF905 family protein | - |
| ECS88_RS00285 () | 40381..41922 | + | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| ECS88_RS00290 () | 41937..42683 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| ECS88_RS00295 () | 42769..44652 | + | 1884 | Protein_45 | ParB/RepB/Spo0J family partition protein | - |
| ECS88_RS00300 () | 44707..45141 | + | 435 | WP_000845922.1 | conjugation system SOS inhibitor PsiB | - |
| ECS88_RS00305 () | 45138..45857 | + | 720 | WP_000994098.1 | plasmid SOS inhibition protein A | - |
| - () | 45869..46080 | + | 212 | NuclAT_0 | - | - |
| - () | 45869..46080 | + | 212 | NuclAT_0 | - | - |
| - () | 45869..46080 | + | 212 | NuclAT_0 | - | - |
| - () | 45869..46080 | + | 212 | NuclAT_0 | - | - |
| ECS88_RS00310 () | 46133..46294 | + | 162 | WP_001332444.1 | type I toxin-antitoxin system Hok family toxin | - |
| ECS88_RS27710 () | 46595..46892 | - | 298 | Protein_49 | hypothetical protein | - |
| ECS88_RS00325 () | 47193..47480 | + | 288 | WP_000107520.1 | hypothetical protein | - |
| ECS88_RS00330 () | 47599..48420 | + | 822 | WP_001234468.1 | DUF945 domain-containing protein | - |
| ECS88_RS00335 () | 48716..49306 | - | 591 | Protein_52 | hypothetical protein | VF |
| ECS88_RS00340 () | 49640..50023 | + | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| ECS88_RS00345 () | 50210..50899 | + | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| ECS88_RS00350 () | 50998..51393 | + | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| ECS88_RS00355 () | 51426..51791 | + | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| ECS88_RS00360 () | 51806..52117 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| ECS88_RS00365 () | 52139..52705 | + | 567 | WP_000399785.1 | type IV conjugative transfer system protein TraE | - |
| ECS88_RS00370 () | 52716..53420 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| ECS88_RS00375 () | 53420..54847 | + | 1428 | WP_000146685.1 | conjugal transfer protein TraB | - |
| ECS88_RS00380 () | 54837..55427 | + | 591 | WP_000002792.1 | conjugal transfer protein TraP | - |
| ECS88_RS00385 () | 55381..55611 | + | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| ECS88_RS00390 () | 55623..55874 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| ECS88_RS00395 () | 55871..56386 | + | 516 | WP_000809841.1 | type IV conjugative transfer system lipoprotein TraV | - |
| ECS88_RS00400 () | 56521..56742 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| ECS88_RS00405 () | 56902..59529 | + | 2628 | WP_001064252.1 | type IV secretion system protein TraC | - |
| ECS88_RS00410 () | 59526..59912 | + | 387 | WP_000214082.1 | type-F conjugative transfer system protein TrbI | - |
| ECS88_RS00415 () | 59909..60541 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| ECS88_RS00420 () | 60538..61530 | + | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| ECS88_RS00425 () | 61539..62177 | + | 639 | WP_000777693.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| ECS88_RS00430 () | 62174..63982 | + | 1809 | WP_000821846.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| ECS88_RS00435 () | 64009..64266 | + | 258 | WP_000864325.1 | conjugal transfer protein TrbE | - |
| ECS88_RS00440 () | 64259..65002 | + | 744 | WP_001030389.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| ECS88_RS00445 () | 65018..65365 | + | 348 | WP_001287676.1 | conjugal transfer protein TrbA | - |
| ECS88_RS00450 () | 65484..65768 | + | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| ECS88_RS00455 () | 65755..66300 | + | 546 | WP_000052618.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| ECS88_RS00460 () | 66230..66592 | + | 363 | WP_002430925.1 | P-type conjugative transfer protein TrbJ | - |
| ECS88_RS00465 () | 66592..67965 | + | 1374 | WP_001137358.1 | conjugal transfer protein TraH | - |
| ECS88_RS00470 () | 67962..70788 | + | 2827 | Protein_79 | conjugal transfer mating pair stabilization protein TraG | - |
| ECS88_RS00475 () | 70803..71306 | + | 504 | WP_000605510.1 | hypothetical protein | - |
| ECS88_RS00480 () | 71338..72069 | + | 732 | WP_001447147.1 | complement resistance protein TraT | - |
| ECS88_RS00485 () | 72321..74474 | + | 2154 | WP_001350920.1 | type IV conjugative transfer system coupling protein TraD | - |
| ECS88_RS00490 () | 74474..79744 | + | 5271 | WP_000986991.1 | Multifunctional conjugation protein TraI | Relaxase |
| ECS88_RS00495 () | 79764..80510 | + | 747 | WP_000205759.1 | conjugal transfer pilus acetylase TraX | - |
| ECS88_RS00500 () | 80565..81125 | + | 561 | WP_000139359.1 | fertility inhibition protein FinO | - |
| ECS88_RS00505 () | 81263..81475 | + | 213 | WP_001311693.1 | hypothetical protein | - |
| ECS88_RS00510 () | 81718..82119 | + | 402 | WP_001233870.1 | thermonuclease family protein | - |
| ECS88_RS00515 () | 82164..82424 | + | 261 | WP_000083818.1 | replication regulatory protein RepA | - |
| ECS88_RS00525 () | 82650..82724 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| ECS88_RS00530 () | 82717..83574 | + | 858 | WP_000130940.1 | incFII family plasmid replication initiator RepA | - |
| ECS88_RS00545 () | 84490..84759 | + | 270 | WP_000079941.1 | hypothetical protein | Antitoxin Detail |
| ECS88_RS00550 () | 84756..85037 | + | 282 | WP_000969996.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ECS88_RS00555 () | 85083..85931 | + | 849 | WP_001057989.1 | 3'-5' exonuclease | - |
| ECS88_RS00560 () | 86117..87997 | + | 1881 | WP_001283335.1 | colicin | - |
| ECS88_RS00565 () | 88019..88354 | - | 336 | WP_001080729.1 | colicin 1A immunity protein | - |
| ECS88_RS00575 () | 88483..88740 | + | 258 | WP_000142431.1 | hypothetical protein | - |
| ECS88_RS00580 () | 88760..89350 | - | 591 | WP_001350923.1 | hypothetical protein | - |
| ECS88_RS00585 () | 89347..89607 | - | 261 | WP_000343091.1 | hypothetical protein | - |
| ECS88_RS00590 () | 89900..90352 | + | 453 | WP_000670963.1 | N-acetyltransferase | - |
| ECS88_RS00595 () | 90408..90674 | - | 267 | WP_001017350.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ECS88_RS00600 () | 90671..90940 | - | 270 | WP_000379710.1 | SemiSWEET transporter | - |
| ECS88_RS00605 () | 90942..91719 | - | 778 | Protein_102 | Gfo/Idh/MocA family oxidoreductase | - |
| ECS88_RS27145 () | 91880..92116 | + | 237 | WP_001323890.1 | colicin V immunity protein | - |
| ECS88_RS00615 () | 92094..92405 | + | 312 | WP_001259758.1 | colicin V | - |
| ECS88_RS00620 () | 92575..94689 | - | 2115 | WP_001183604.1 | peptidase domain-containing ABC transporter | - |
| ECS88_RS00625 () | 94664..95938 | - | 1275 | WP_000489608.1 | HlyD family secretion protein | - |
| ECS88_RS00635 () | 96549..96818 | + | 270 | WP_000079941.1 | hypothetical protein | Antitoxin Detail |
| ECS88_RS00640 () | 96815..96997 | + | 183 | WP_000970009.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ECS88_RS00645 () | 97096..97404 | + | 309 | WP_000377483.1 | hypothetical protein | - |
| ECS88_RS00660 () | 97964..98998 | + | 1035 | WP_001190234.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| ECS88_RS00680 () | 99851..102013 | + | 2163 | WP_001222182.1 | Ferric enterobactin receptor | VF |
| ECS88_RS00685 () | 102058..103014 | - | 957 | WP_000271277.1 | Ferri-bacillibactin esterase BesA | VF |
| ECS88_RS00690 () | 103099..104328 | - | 1230 | WP_000933672.1 | Enterochelin esterase | VF |
| ECS88_RS00695 () | 104432..108091 | - | 3660 | WP_001442133.1 | Multidrug efflux ATP-binding/permease protein | VF |
| ECS88_RS00700 () | 108231..109346 | - | 1116 | WP_001318220.1 | Elloramycin glycosyltransferase ElmGT | VF |
| ECS88_RS00710 () | 110582..111681 | - | 1100 | Protein_116 | transposase | - |
| ECS88_RS00720 () | 112235..112434 | + | 200 | Protein_117 | lysis protein | - |
| ECS88_RS00725 () | 112492..112785 | - | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| ECS88_RS00740 () | 113412..114640 | + | 1229 | WP_088130945.1 | IS3 family transposase IS2 | Transposase |
| ECS88_RS00750 () | 115864..117057 | + | 1194 | WP_000450494.1 | GTP-binding protein | - |
| ECS88_RS00755 () | 117235..117384 | + | 150 | Protein_121 | IS3 family transposase | - |
| ECS88_RS00760 () | 117694..119083 | + | 1390 | Protein_122 | ISNCY family transposase ISKpn21 | Transposase |
| ECS88_RS00770 () | 119318..120259 | + | 942 | WP_000974762.1 | hypothetical protein | - |
| ECS88_RS00775 () | 120388..120582 | - | 195 | Protein_124 | IS200-IS605 family transposase IS200C | Transposase |
| ECS88_RS00785 () | 121056..122426 | - | 1371 | WP_001312828.1 | efflux transporter outer membrane subunit | - |
| ECS88_RS00790 () | 122430..124370 | - | 1941 | WP_000733252.1 | Macrolide export ATP-binding/permease protein MacB | VF |
| ECS88_RS00795 () | 124367..125554 | - | 1188 | WP_000928804.1 | efflux RND transporter periplasmic adaptor subunit | - |
| ECS88_RS00800 () | 126535..126860 | + | 326 | Protein_128 | IS3 family transposase IS911 | Transposase |
| ECS88_RS00810 () | 128405..128563 | + | 159 | WP_001312823.1 | integrase core domain-containing protein | - |
| ECS88_RS00825 () | 129836..130789 | + | 954 | WP_000280980.1 | Protease 7 | VF |
| ECS88_RS00835 () | 131222..132331 | + | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| ECS88_RS00840 () | 132400..133302 | + | 903 | WP_001350955.1 | hypothetical protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|