MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 74551 bp
Accession: NC_011204 Location: 1..74551 Organism: Salmonella enterica subsp. enterica serovar Dublin str. CT 02021853 Replicon: plasmid pCT02021853_74
Accession: NC_011204 Location: 1..74551 Organism: Salmonella enterica subsp. enterica serovar Dublin str. CT 02021853 Replicon: plasmid pCT02021853_74
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SED_RS00010 () | 173..1115 | + | 943 | Protein_0 | Rpn family recombination-promoting nuclease/putative transposase | - |
| SED_RS00015 () | 1147..1713 | - | 567 | WP_001541562.1 | DUF2913 family protein | - |
| SED_RS00020 () | 1770..2186 | - | 417 | WP_000988946.1 | hypothetical protein | - |
| SED_RS00025 () | 2289..2705 | - | 417 | WP_001541564.1 | hypothetical protein | - |
| SED_RS00030 () | 2791..3906 | - | 1116 | WP_001247118.1 | DNA-binding protein | - |
| SED_RS00035 () | 4165..4653 | + | 489 | WP_001135407.1 | hypothetical protein | - |
| SED_RS00040 () | 5308..6048 | + | 741 | WP_001541566.1 | carbonic anhydrase | - |
| SED_RS00045 () | 6255..6815 | + | 561 | WP_001240330.1 | recombinase family protein | - |
| SED_RS00050 () | 6799..8463 | + | 1665 | WP_000098783.1 | IS481 family transposase | - |
| SED_RS00055 () | 8396..9421 | + | 1026 | WP_001576625.1 | ExeA family protein | - |
| SED_RS00060 () | 9610..10647 | - | 1038 | WP_001121398.1 | IS630 family transposase | - |
| SED_RS00065 () | 11254..12147 | + | 894 | WP_000346692.1 | virulence genes transcriptional activator SpvR | - |
| SED_RS00070 () | 12321..12485 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| SED_RS00075 () | 12659..13426 | + | 768 | WP_001575487.1 | virulence protein SpvA | - |
| SED_RS26540 () | 13389..13556 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| SED_RS00080 () | 13608..15389 | + | 1782 | WP_001675599.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| SED_RS00085 () | 15670..16395 | + | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| SED_RS00090 () | 16656..17306 | + | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| SED_RS00095 () | 17433..17858 | - | 426 | WP_000064919.1 | IS200/IS605 family transposase | - |
| SED_RS00100 () | 17915..18283 | + | 369 | WP_001675946.1 | helix-turn-helix domain-containing protein | - |
| SED_RS00105 () | 18350..18910 | - | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| SED_RS24190 () | 19122..19458 | - | 337 | Protein_21 | hypothetical protein | - |
| SED_RS00115 () | 19452..19961 | - | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| SED_RS00120 () | 19965..20678 | - | 714 | WP_000545756.1 | EAL domain-containing protein | - |
| SED_RS00125 () | 20687..21469 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| SED_RS00130 () | 21504..22025 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| SED_RS00135 () | 22022..22312 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| SED_RS00140 () | 22314..22619 | - | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| SED_RS00145 () | 22621..22839 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| SED_RS00150 () | 23584..23814 | + | 231 | WP_001261283.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| SED_RS00155 () | 23811..24239 | + | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| SED_RS00160 () | 24809..25657 | - | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| SED_RS26545 () | 25683..25844 | - | 162 | WP_001816720.1 | hypothetical protein | - |
| SED_RS00165 () | 26105..26317 | - | 213 | WP_000063794.1 | hypothetical protein | - |
| SED_RS00170 () | 26390..26974 | - | 585 | WP_001575501.1 | hypothetical protein | - |
| SED_RS00175 () | 27099..27812 | - | 714 | WP_000801115.1 | hypothetical protein | - |
| SED_RS00180 () | 27812..28087 | - | 276 | WP_001020576.1 | hypothetical protein | - |
| SED_RS00185 () | 28074..28838 | - | 765 | WP_000827659.1 | K88 minor fimbrial subunit faeI | - |
| SED_RS00190 () | 28866..29663 | - | 798 | WP_000704721.1 | F4 (K88) fimbria minor subunit FaeH | - |
| SED_RS00195 () | 29899..30171 | - | 273 | WP_001178538.1 | hypothetical protein | - |
| SED_RS00205 () | 31630..32289 | + | 660 | WP_001575507.1 | hypothetical protein | - |
| SED_RS24205 () | 32325..33119 | + | 795 | WP_001575508.1 | hypothetical protein | - |
| SED_RS26170 () | 33414..33611 | + | 198 | WP_001675602.1 | transposase | - |
| SED_RS00215 () | 33766..33939 | + | 174 | WP_001675604.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| SED_RS24215 () | 33969..34363 | + | 395 | Protein_44 | transposase | - |
| SED_RS00225 () | 35158..36039 | - | 882 | WP_001746973.1 | incFII family plasmid replication initiator RepA | - |
| SED_RS00230 () | 36020..36097 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| SED_RS00240 () | 36345..36611 | - | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
| SED_RS25695 () | 36790..37233 | - | 444 | Protein_48 | phospholipase | - |
| SED_RS00250 () | 37399..37851 | - | 453 | WP_000477656.1 | hypothetical protein | - |
| SED_RS00255 () | 37968..38531 | - | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| SED_RS00260 () | 38586..39326 | - | 741 | WP_000177628.1 | conjugal transfer pilus acetylase TraX | - |
| SED_RS00265 () | 39346..43602 | - | 4257 | Protein_52 | conjugative transfer relaxase/helicase TraI | - |
| SED_RS00270 () | 43676..44320 | + | 645 | WP_000203397.1 | recombinase family protein | - |
| SED_RS00280 () | 45398..46525 | + | 1128 | WP_000156234.1 | hypothetical protein | - |
| SED_RS00285 () | 46684..47169 | - | 486 | WP_001281416.1 | Abi family protein | - |
| SED_RS00290 () | 47832..48266 | - | 435 | WP_001293135.1 | H-NS histone family protein | - |
| SED_RS00295 () | 48282..48488 | - | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| SED_RS00300 () | 48485..50638 | - | 2154 | WP_001235752.1 | type IA DNA topoisomerase | - |
| SED_RS00305 () | 50643..51218 | - | 576 | WP_001198970.1 | hypothetical protein | - |
| SED_RS26550 () | 51222..51368 | - | 147 | WP_000382583.1 | hypothetical protein | - |
| SED_RS24235 () | 51529..51831 | - | 303 | WP_000717627.1 | IncN plasmid KikA protein | - |
| SED_RS24240 () | 51828..52241 | - | 414 | WP_001575522.1 | hypothetical protein | - |
| SED_RS00310 () | 52238..54073 | - | 1836 | WP_000053824.1 | type IV secretory system conjugative DNA transfer family protein | - |
| SED_RS00315 () | 54076..55106 | - | 1031 | Protein_64 | P-type DNA transfer ATPase VirB11 | - |
| SED_RS00320 () | 55108..56313 | - | 1206 | WP_000139139.1 | TrbI/VirB10 family protein | - |
| SED_RS00325 () | 56310..57239 | - | 930 | WP_000783377.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| SED_RS00330 () | 57244..57957 | - | 714 | WP_000394613.1 | type IV secretion system protein | - |
| SED_RS00335 () | 58202..59335 | - | 1134 | WP_000513456.1 | type IV secretion system protein | - |
| SED_RS00340 () | 59345..59572 | - | 228 | WP_000835348.1 | EexN family lipoprotein | - |
| SED_RS00345 () | 59573..60331 | - | 759 | WP_000744198.1 | pilus assembly protein | - |
| SED_RS00350 () | 60342..63095 | - | 2754 | WP_001675613.1 | VirB3 family type IV secretion system protein | - |
| SED_RS00355 () | 63114..63410 | - | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| SED_RS00360 () | 63388..64035 | - | 648 | WP_000953526.1 | lytic transglycosylase domain-containing protein | - |
| SED_RS00365 () | 64068..64280 | - | 213 | WP_000125172.1 | hypothetical protein | - |
| SED_RS24245 () | 64210..64728 | - | 519 | WP_001675951.1 | ActX protein | - |
| SED_RS00370 () | 65074..66255 | - | 1182 | WP_000539536.1 | relaxase/mobilization nuclease domain-containing protein | - |
| SED_RS00375 () | 66258..66803 | - | 546 | WP_000757691.1 | hypothetical protein | - |
| SED_RS26555 () | 66798..66872 | - | 75 | Protein_78 | DNA distortion polypeptide 3 | - |
| SED_RS24250 () | 67129..67401 | - | 273 | WP_000160399.1 | hypothetical protein | - |
| SED_RS26560 () | 67414..67611 | - | 198 | WP_001675595.1 | hypothetical protein | - |
| SED_RS24255 () | 67633..67812 | - | 180 | WP_001575529.1 | hypothetical protein | - |
| SED_RS00385 () | 67855..68184 | - | 330 | WP_000866650.1 | hypothetical protein | - |
| SED_RS00390 () | 68277..68492 | - | 216 | WP_001180117.1 | hypothetical protein | - |
| SED_RS00395 () | 68482..68727 | - | 246 | WP_000356542.1 | hypothetical protein | - |
| SED_RS00400 () | 68772..69095 | - | 324 | WP_001181909.1 | hypothetical protein | - |
| SED_RS00405 () | 69241..69522 | - | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SED_RS00410 () | 69512..69763 | - | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| SED_RS00415 () | 70977..71813 | + | 837 | WP_001575533.1 | replication initiation protein | - |
| SED_RS00420 () | 71853..72299 | + | 447 | WP_001074381.1 | hypothetical protein | - |
| SED_RS00425 () | 72367..72789 | + | 423 | WP_000202949.1 | hypothetical protein | - |
| SED_RS00430 () | 73428..73658 | - | 231 | WP_000051066.1 | partitioning protein | - |
| SED_RS00435 () | 73710..74330 | - | 621 | WP_000864788.1 | ParA family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|