MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 64980 bp
Accession: NC_010901 Location: 1..64980 Organism: Lactococcus lactis Replicon: plasmid pNP40
Accession: NC_010901 Location: 1..64980 Organism: Lactococcus lactis Replicon: plasmid pNP40
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HS479_RS00005 | 215..442 | + | 228 | WP_235133137.1 | hypothetical protein | - |
| HS479_RS00010 (pNP40_p01) | 543..1211 | + | 669 | WP_012477730.1 | type II CAAX endopeptidase family protein | - |
| HS479_RS00015 (pNP40_p02) | 1280..2236 | - | 957 | WP_012477731.1 | S41 family peptidase | - |
| HS479_RS00020 | 2399..2575 | + | 177 | Protein_3 | IS982 family transposase | - |
| HS479_RS00025 (pNP40_p03) | 2580..3824 | - | 1245 | WP_012477732.1 | LlaJI family restriction endonuclease | - |
| HS479_RS00030 (pNP40_p04) | 3836..5593 | - | 1758 | WP_012477733.1 | AAA family ATPase | - |
| HS479_RS00035 (pNP40_p05) | 5606..6745 | - | 1140 | WP_012477734.1 | DNA cytosine methyltransferase | - |
| HS479_RS00040 (pNP40_p06) | 6756..8153 | - | 1398 | WP_012477735.1 | DNA cytosine methyltransferase | - |
| HS479_RS00045 (pNP40_p07) | 8755..9435 | + | 681 | WP_012477736.1 | IS6 family transposase ISS1E | Transposase |
| HS479_RS00050 (pNP40_p08) | 9536..10669 | - | 1134 | WP_012477737.1 | hypothetical protein | - |
| HS479_RS00055 (pNP40_p09) | 11074..12357 | + | 1284 | WP_012477738.1 | DUF2130 domain-containing protein | - |
| HS479_RS00060 (pNP40_p10) | 12404..14944 | + | 2541 | WP_012477739.1 | ATP-binding protein | - |
| HS479_RS00065 (pNP40_p11) | 15106..15714 | - | 609 | WP_181409262.1 | hypothetical protein | - |
| HS479_RS00070 (pNP40_p12) | 15683..16282 | - | 600 | WP_012477741.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| HS479_RS00075 (pNP40_p13) | 16645..16983 | - | 339 | WP_012477742.1 | bacteriocin immunity protein | - |
| HS479_RS00080 (pNP40_p14) | 17122..17997 | - | 876 | WP_181409263.1 | hypothetical protein | - |
| HS479_RS00085 (pNP40_p16) | 18644..19672 | - | 1029 | WP_012477745.1 | Abi family protein | - |
| HS479_RS00090 (pNP40_p17) | 19954..21420 | + | 1467 | WP_012477746.1 | Y-family DNA polymerase | - |
| HS479_RS00095 | 21483..21812 | + | 330 | WP_238834587.1 | hypothetical protein | - |
| HS479_RS00100 (pNP40_p18) | 21825..22850 | + | 1026 | WP_012477747.1 | recombinase RecA | - |
| HS479_RS00105 (pNP40_p19) | 23014..23910 | - | 897 | WP_012477748.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| HS479_RS00110 (pNP40_p20) | 23907..24770 | - | 864 | WP_012477749.1 | AbiEi | Antitoxin Detail |
| HS479_RS00115 (pNP40_p21) | 25123..25704 | - | 582 | WP_012477750.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| HS479_RS00120 (pNP40_p22) | 25975..26478 | + | 504 | WP_012477751.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| HS479_RS00125 (pNP40_p23) | 26725..27162 | - | 438 | WP_012477752.1 | IS3 family transposase IS1520 | Transposase |
| HS479_RS00130 (pNP40_p24) | 27575..27817 | - | 243 | WP_012477753.1 | IS3 family transposase ISRgn1 | Transposase |
| HS479_RS00135 (pNP40_p25) | 28026..30293 | + | 2268 | WP_012477754.1 | excinuclease ABC subunit UvrA | - |
| HS479_RS00140 (pNP40_p26) | 30394..30807 | - | 414 | WP_012477755.1 | IS3 family transposase IS1223 | Transposase |
| HS479_RS00145 (pNP40_p27) | 30990..31498 | + | 509 | Protein_28 | type I restriction endonuclease | - |
| HS479_RS00150 (pNP40_p28) | 31640..32485 | + | 846 | WP_012477756.1 | aldo/keto reductase | - |
| HS479_RS00155 | 32696..32836 | + | 141 | WP_003132136.1 | hypothetical protein | - |
| HS479_RS00160 (pNP40_p29) | 33611..35071 | - | 1461 | WP_012477757.1 | Elongation factor Tu | VF |
| HS479_RS00165 (pNP40_p30) | 35080..36300 | - | 1221 | WP_012477758.1 | hypothetical protein | - |
| HS479_RS00170 (pNP40_p31) | 36290..37198 | - | 909 | WP_012477759.1 | WYL domain-containing protein | - |
| HS479_RS00175 (pNP40_p32) | 37503..38267 | + | 765 | WP_181409258.1 | hypothetical protein | - |
| HS479_RS00350 | 38277..39140 | + | 864 | WP_012477761.1 | hypothetical protein | - |
| HS479_RS00185 (pNP40_p34) | 39357..40037 | + | 681 | WP_012477762.1 | zinc-ribbon domain-containing protein | - |
| HS479_RS00190 (pNP40_p35) | 40073..40714 | + | 642 | WP_238834589.1 | IS6 family transposase IS1297 | Transposase |
| HS479_RS00195 (pNP40_p36) | 40808..42925 | - | 2118 | WP_012477764.1 | heavy metal translocating P-type ATPase | - |
| HS479_RS00200 (pNP40_p37) | 42922..43281 | - | 360 | WP_003726380.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| HS479_RS00205 | 43502..43636 | + | 135 | Protein_40 | helix-turn-helix domain-containing protein | - |
| HS479_RS00210 (pNP40_p38) | 43887..44087 | - | 201 | WP_011669084.1 | cold-shock protein | - |
| HS479_RS00215 (pNP40_p39) | 44364..44564 | - | 201 | WP_003132324.1 | cold shock domain-containing protein | - |
| HS479_RS00355 | 44695..44781 | - | 87 | Protein_43 | bacteriocin | - |
| HS479_RS00220 | 44780..44997 | + | 218 | Protein_44 | transposase | - |
| HS479_RS00225 (pNP40_p40) | 45317..45595 | + | 279 | WP_012477765.1 | hypothetical protein | - |
| HS479_RS00230 (pNP40_p41) | 45674..46093 | + | 420 | WP_181409259.1 | hypothetical protein | - |
| HS479_RS00235 (pNP40_p42) | 46090..46581 | + | 492 | WP_012477767.1 | hypothetical protein | - |
| HS479_RS00240 (pNP40_p43) | 46596..48431 | + | 1836 | WP_012477768.1 | type IV secretory system conjugative DNA transfer family protein | - |
| HS479_RS00245 (pNP40_p44) | 48446..48721 | + | 276 | WP_012477769.1 | hypothetical protein | - |
| HS479_RS00250 (pNP40_p45) | 48819..49232 | + | 414 | WP_012477770.1 | hypothetical protein | - |
| HS479_RS00255 (pNP40_p46) | 49258..49998 | + | 741 | WP_012477771.1 | hypothetical protein | - |
| HS479_RS00260 (pNP40_p47) | 50001..50369 | + | 369 | WP_012477772.1 | PrgI family protein | - |
| HS479_RS00265 (pNP40_p48) | 50311..52698 | + | 2388 | WP_012477773.1 | hypothetical protein | - |
| HS479_RS00270 | 53256..54559 | + | 1304 | Protein_54 | CHAP domain-containing protein | - |
| HS479_RS00275 (pNP40_p51) | 54549..55139 | + | 591 | WP_012477776.1 | hypothetical protein | - |
| HS479_RS00280 (pNP40_p52) | 55150..55467 | + | 318 | WP_012477777.1 | hypothetical protein | - |
| HS479_RS00285 (pNP40_p53) | 55464..55691 | + | 228 | WP_012477778.1 | hypothetical protein | - |
| HS479_RS00290 (pNP40_p54) | 55795..57036 | + | 1242 | WP_012477779.1 | hypothetical protein | - |
| HS479_RS00295 (pNP40_p55) | 57136..58212 | + | 1077 | WP_012477780.1 | ArdC-like ssDNA-binding domain-containing protein | - |
| HS479_RS00300 (pNP40_p56) | 58209..58523 | + | 315 | WP_012477781.1 | hypothetical protein | - |
| HS479_RS00305 (pNP40_p57) | 58732..59103 | + | 372 | WP_012477782.1 | hypothetical protein | Relaxase |
| HS479_RS00310 (pNP40_p58) | 59106..60623 | + | 1518 | WP_012477783.1 | hypothetical protein | Relaxase |
| HS479_RS00315 | 60889..61092 | - | 204 | WP_181409260.1 | hypothetical protein | - |
| HS479_RS00320 | 61168..61341 | + | 174 | WP_181409261.1 | hypothetical protein | - |
| HS479_RS00325 (pNP40_p59) | 61396..62592 | - | 1197 | WP_012477784.1 | replication initiator protein A | - |
| HS479_RS00330 (pNP40_p60) | 63024..63872 | + | 849 | WP_012477785.1 | ParA family protein | - |
| HS479_RS00335 (pNP40_p61) | 63891..64190 | + | 300 | WP_012477786.1 | hypothetical protein | - |
| HS479_RS00340 (pNP40_p62) | 64440..64895 | + | 456 | Protein_68 | IS3 family transposase IS981 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Lactococcus lactis subsp. lactis strain DRC3 | Non-Mobilizable plasmid | TA181810 | NZ_CP064837 | 1..64981 | 0 |