MGE detailed information
MGE type: Genomic_island MGE length: 32762 bp
Accession: NC_008533 Location: 927771..960532 Organism: Streptococcus pneumoniae D39 Replicon: chromosome
Accession: NC_008533 Location: 927771..960532 Organism: Streptococcus pneumoniae D39 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SPD_RS04900 (SPD_0912) | 923055..923669 | + | 615 | WP_000476388.1 | cell wall hydrolase Pmp23 | - |
| SPD_RS04905 (SPD_0913) | 923743..924717 | + | 975 | WP_001227739.1 | DUF1002 domain-containing protein | - |
| SPD_RS04910 (SPD_0914) | 924791..926422 | + | 1632 | WP_000914581.1 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
| SPD_RS04915 | 926636..926914 | + | 279 | WP_000710803.1 | hypothetical protein | - |
| SPD_RS04920 | 927160..927378 | + | 219 | WP_000885335.1 | helix-turn-helix transcriptional regulator | - |
| SPD_RS04930 (SPD_0915) | 927771..928796 | + | 1026 | WP_000790743.1 | iron-siderophore ABC transporter substrate-binding protein | - |
| SPD_RS04935 (SPD_0916) | 928786..929793 | + | 1008 | WP_001244692.1 | Ferric enterobactin transport system permease protein FepD | VF |
| SPD_RS04940 (SPD_0917) | 929793..930800 | + | 1008 | WP_001180357.1 | putative siderophore transport system permease protein YfhA | VF |
| SPD_RS04945 (SPD_0918) | 930800..931594 | + | 795 | WP_000677519.1 | Petrobactin import ATP-binding protein FpuD | VF |
| SPD_RS04950 | 931982..932371 | + | 390 | WP_074017679.1 | restriction endonuclease subunit S | - |
| SPD_RS11200 | 932337..932651 | + | 315 | WP_161801538.1 | hypothetical protein | - |
| SPD_RS11330 (SPD_0920) | 933335..933496 | + | 162 | WP_000368174.1 | hypothetical protein | - |
| SPD_RS04965 (SPD_0921) | 933588..935267 | + | 1680 | WP_000031832.1 | Tn3 family transposase TnpR_ISAcsp1 | Transposase |
| SPD_RS04970 (SPD_0922) | 935535..936101 | + | 567 | WP_000234985.1 | hypothetical protein | - |
| SPD_RS04975 (SPD_0923) | 936423..936611 | + | 189 | WP_000179769.1 | hypothetical protein | - |
| SPD_RS04980 (SPD_0924) | 936673..937488 | + | 816 | WP_000262006.1 | ATP-grasp domain-containing protein | - |
| SPD_RS04985 (SPD_0925) | 937488..938342 | + | 855 | WP_000900020.1 | ADP-ribosylglycohydrolase family protein | - |
| SPD_RS04990 (SPD_0926) | 938454..939338 | + | 885 | WP_000710119.1 | diacylglycerol kinase family lipid kinase | - |
| SPD_RS04995 (SPD_0927) | 939501..941240 | + | 1740 | WP_000423451.1 | glycoside hydrolase family 13 protein | - |
| SPD_RS05000 (SPD_0928) | 941326..941643 | + | 318 | WP_000995820.1 | hypothetical protein | - |
| SPD_RS05005 (SPD_0929) | 941689..941970 | + | 282 | WP_000266233.1 | hypothetical protein | - |
| SPD_RS05010 (SPD_0930) | 942415..942891 | + | 477 | WP_000579612.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| SPD_RS05015 (SPD_0931) | 942891..943652 | + | 762 | WP_000405357.1 | zeta toxin family protein | Toxin Detail |
| SPD_RS05020 (SPD_0932) | 943680..944836 | + | 1157 | Protein_931 | hypothetical protein | - |
| SPD_RS05030 (SPD_0934) | 945668..946027 | + | 360 | WP_000529543.1 | hypothetical protein | - |
| SPD_RS05035 (SPD_0935) | 946037..946366 | + | 330 | WP_000263037.1 | MobC family plasmid mobilization relaxosome protein | - |
| SPD_RS11335 | 946389..948274 | + | 1886 | Protein_934 | relaxase/mobilization nuclease domain-containing protein | - |
| SPD_RS05055 (SPD_0939) | 948319..949173 | - | 855 | WP_000837499.1 | XRE/MutR family transcriptional regulator | - |
| SPD_RS10965 | 949254..949325 | + | 72 | WP_001809668.1 | peptide pheromone SHP3 | - |
| SPD_RS05060 (SPD_0940) | 949425..950720 | + | 1296 | WP_000794307.1 | nucleotide sugar dehydrogenase | - |
| SPD_RS05065 (SPD_0941) | 950704..951330 | + | 627 | WP_000862562.1 | PIG-L family deacetylase | - |
| SPD_RS05070 (SPD_0942) | 951340..952122 | + | 783 | WP_000809423.1 | sugar phosphate isomerase/epimerase | - |
| SPD_RS05075 (SPD_0943) | 952145..954037 | + | 1893 | WP_000710678.1 | hypothetical protein | - |
| SPD_RS05080 (SPD_0944) | 954066..955172 | + | 1107 | WP_000444113.1 | hypothetical protein | - |
| SPD_RS05085 (SPD_0945) | 955180..956490 | + | 1311 | WP_000423517.1 | AMP-binding protein | - |
| SPD_RS05090 (SPD_0946) | 956492..957715 | + | 1224 | WP_000252068.1 | ATP phosphoribosyltransferase regulatory subunit | - |
| SPD_RS05095 (SPD_0947) | 957705..958655 | + | 951 | WP_000389975.1 | hypothetical protein | - |
| SPD_RS05100 (SPD_0948) | 958670..959869 | + | 1200 | WP_000238677.1 | ATP-grasp domain-containing protein | - |
| SPD_RS05105 (SPD_0949) | 959888..960532 | + | 645 | WP_000270072.1 | Putative acetyltransferase EpsM | VF |
| SPD_RS05110 (SPD_0950) | 960915..962126 | + | 1212 | WP_000687010.1 | MFS transporter | - |
| SPD_RS05115 (SPD_0951) | 962785..963006 | + | 222 | WP_000286251.1 | helix-turn-helix domain-containing protein | - |
| SPD_RS05125 | 963454..963764 | + | 311 | Protein_949 | transposase family protein | - |
| SPD_RS05130 (SPD_0952) | 963908..965137 | + | 1230 | WP_000703358.1 | FtsW/RodA/SpoVE family cell cycle protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Streptococcus pneumoniae R6 | Genomic island | TA6282 | NC_003098 | 920239..953000 | 0 |