MGE detailed information
MGE type: Prophage MGE length: 48527 bp
Accession: NC_008258 Location: 2754863..2803389 Organism: Shigella flexneri 5 str. 8401 Replicon: chromosome
Accession: NC_008258 Location: 2754863..2803389 Organism: Shigella flexneri 5 str. 8401 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SFV_RS14865 () | 2750618..2752255 | + | 1638 | WP_000210878.1 | CTP synthase (glutamine hydrolyzing) | - |
| SFV_RS14870 () | 2752343..2753638 | + | 1296 | WP_000036721.1 | phosphopyruvate hydratase | - |
| SFV_RS14875 () | 2753698..2754570 | - | 873 | WP_001268465.1 | YgcG family protein | - |
| SFV_RS14885 () | 2754863..2755534 | + | 672 | WP_001199952.1 | 7-carboxy-7-deazaguanine synthase QueE | - |
| SFV_RS26070 () | 2755573..2756270 | - | 698 | Protein_2720 | IS1 family transposase | - |
| SFV_RS14900 () | 2756385..2757179 | + | 795 | WP_024260296.1 | FAD-binding oxidoreductase | - |
| SFV_RS14905 () | 2757201..2758610 | + | 1410 | WP_000147685.1 | MFS transporter | - |
| SFV_RS14910 () | 2758588..2759367 | + | 780 | WP_005051549.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
| SFV_RS14915 () | 2759364..2760224 | + | 861 | WP_005051545.1 | electron transfer flavoprotein subunit alpha/FixB family protein | - |
| SFV_RS14920 () | 2760372..2760947 | - | 576 | Protein_2725 | glycerol-3-phosphate responsive antiterminator | - |
| SFV_RS14925 () | 2761046..2761736 | - | 691 | Protein_2726 | tyrosine-type recombinase/integrase | - |
| SFV_RS27540 () | 2763234..2763350 | + | 117 | Protein_2728 | helix-turn-helix domain-containing protein | - |
| SFV_RS14940 () | 2763458..2766364 | + | 2907 | WP_005105712.1 | toprim domain-containing protein | - |
| SFV_RS14945 () | 2766527..2766715 | + | 189 | WP_005105713.1 | hypothetical protein | - |
| SFV_RS14950 () | 2766712..2767122 | + | 411 | WP_000814621.1 | recombination protein NinB | - |
| SFV_RS14955 () | 2767119..2767295 | + | 177 | WP_024260406.1 | NinE family protein | - |
| SFV_RS14960 () | 2767337..2767645 | - | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| SFV_RS26075 () | 2767635..2767898 | - | 264 | WP_001202685.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SFV_RS14965 () | 2767830..2768336 | + | 507 | WP_044024397.1 | ash family protein | - |
| SFV_RS24525 () | 2768352..2768846 | + | 495 | WP_094096580.1 | Rha family transcriptional regulator | - |
| SFV_RS14975 () | 2768843..2769076 | + | 234 | WP_000618003.1 | hypothetical protein | - |
| SFV_RS14980 () | 2769063..2769971 | + | 909 | WP_001247829.1 | hypothetical protein | - |
| SFV_RS14985 () | 2769982..2770860 | + | 879 | WP_000988183.1 | ATP-binding protein | - |
| SFV_RS14990 () | 2770857..2772248 | + | 1392 | WP_000211321.1 | replicative DNA helicase | - |
| SFV_RS14995 () | 2772245..2772502 | + | 258 | WP_001064799.1 | hypothetical protein | - |
| SFV_RS15000 () | 2772595..2772795 | + | 201 | WP_000111769.1 | protein ninH | - |
| SFV_RS15005 () | 2772788..2773168 | + | 381 | WP_001204832.1 | antitermination protein | - |
| SFV_RS15030 () | 2773971..2774186 | + | 216 | WP_000839566.1 | class II holin family protein | - |
| SFV_RS15035 () | 2774190..2774820 | + | 631 | Protein_2745 | hypothetical protein | - |
| SFV_RS15040 () | 2774886..2775419 | + | 534 | WP_001274721.1 | lysozyme | - |
| SFV_RS28580 () | 2775416..2775883 | + | 468 | WP_000092287.1 | lysis protein | - |
| SFV_RS15050 () | 2776086..2776265 | + | 180 | Protein_2748 | Rha family transcriptional regulator | - |
| SFV_RS15065 () | 2777641..2777949 | + | 309 | WP_001346234.1 | hypothetical protein | - |
| SFV_RS15070 () | 2777946..2778158 | + | 213 | WP_000187851.1 | hypothetical protein | - |
| SFV_RS28585 () | 2778257..2778433 | - | 177 | WP_001205133.1 | hypothetical protein | - |
| SFV_RS15080 () | 2778830..2779042 | + | 213 | WP_005107083.1 | hypothetical protein | - |
| SFV_RS26080 () | 2779099..2779218 | + | 120 | Protein_2754 | IS3 family transposase ISSfl10 | Transposase |
| SFV_RS15090 () | 2779260..2780473 | - | 1214 | Protein_2755 | IS3 family transposase IS629 | Transposase |
| SFV_RS15105 () | 2780529..2781568 | + | 1040 | Protein_2756 | IS3 family transposase IS600 | Transposase |
| SFV_RS15110 () | 2781611..2781919 | + | 309 | Protein_2757 | terminase small subunit | - |
| SFV_RS15115 () | 2781891..2783819 | + | 1929 | WP_001026849.1 | phage terminase large subunit family protein | - |
| SFV_RS15120 () | 2783803..2784006 | + | 204 | WP_000259004.1 | head-tail joining protein | - |
| SFV_RS15125 () | 2784003..2785596 | + | 1594 | Protein_2760 | phage portal protein | - |
| SFV_RS15135 () | 2785586..2787091 | + | 1506 | WP_001254016.1 | S49 family peptidase | - |
| SFV_RS15140 () | 2787128..2787475 | + | 348 | WP_000256830.1 | head decoration protein | - |
| SFV_RS15145 () | 2787533..2788561 | + | 1029 | WP_000522637.1 | major capsid protein | - |
| SFV_RS15150 () | 2788613..2788999 | + | 387 | WP_000201488.1 | DNA-packaging protein FI | - |
| SFV_RS15155 () | 2789011..2789364 | + | 354 | WP_000348592.1 | tail attachment protein | - |
| SFV_RS15160 () | 2789374..2789955 | + | 582 | WP_000677139.1 | phage tail protein | - |
| SFV_RS15165 () | 2789952..2790353 | + | 402 | WP_001079402.1 | phage minor tail U family protein | - |
| SFV_RS15170 () | 2790364..2791104 | + | 741 | WP_000211137.1 | Ig-like domain-containing protein | - |
| SFV_RS15175 () | 2791163..2791549 | + | 387 | WP_000478927.1 | phage minor tail protein G | - |
| SFV_RS15180 () | 2791558..2791887 | + | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| SFV_RS15185 () | 2791859..2794901 | + | 3043 | Protein_2771 | phage tail tape measure protein | - |
| SFV_RS28770 () | 2794901..2795149 | + | 249 | Protein_2772 | phage tail protein | - |
| SFV_RS15190 () | 2795144..2795842 | + | 699 | WP_001152490.1 | phage minor tail protein L | - |
| SFV_RS15195 () | 2795847..2796590 | + | 744 | WP_000194737.1 | C40 family peptidase | - |
| SFV_RS15200 () | 2796536..2797129 | + | 594 | WP_165850933.1 | tail assembly protein | - |
| SFV_RS15205 () | 2797190..2800669 | + | 3480 | WP_000515521.1 | host specificity protein J | - |
| SFV_RS15210 () | 2800737..2801336 | + | 600 | WP_001230369.1 | Outer membrane protein X | VF |
| SFV_RS15215 () | 2801400..2802815 | + | 1416 | WP_000268794.1 | prophage tail fiber N-terminal domain-containing protein | - |
| SFV_RS15220 () | 2802766..2803389 | + | 624 | WP_000930151.1 | DUF4376 domain-containing protein | - |
| SFV_RS15230 () | 2803569..2805332 | - | 1764 | WP_000801164.1 | E3 ubiquitin--protein ligase | - |
| SFV_RS28190 () | 2805424..2805510 | + | 87 | Protein_2781 | transposase | - |
| SFV_RS15240 () | 2805816..2806076 | - | 261 | WP_000109522.1 | ferredoxin family protein | - |
| SFV_RS15245 () | 2806067..2807338 | - | 1272 | WP_005070644.1 | FAD-dependent oxidoreductase | - |
| SFV_RS15250 () | 2807416..2807778 | - | 363 | WP_000108294.1 | 6-carboxytetrahydropterin synthase QueD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120361 | NZ_CP037923 | 407819..456347 | 0.001 |