MGE detailed information
MGE type: Prophage MGE length: 17167 bp
Accession: NC_008258 Location: 1876166..1893332 Organism: Shigella flexneri 5 str. 8401 Replicon: chromosome
Accession: NC_008258 Location: 1876166..1893332 Organism: Shigella flexneri 5 str. 8401 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SFV_RS28040 () | 1871737..1871979 | + | 243 | WP_134799007.1 | AraC family ligand binding domain-containing protein | - |
| SFV_RS10180 () | 1871940..1872551 | + | 612 | WP_044024349.1 | AraC family transcriptional regulator | - |
| SFV_RS10190 () | 1872941..1873084 | + | 144 | Protein_1875 | AbgT family transporter | - |
| SFV_RS10195 () | 1873095..1873610 | + | 516 | WP_000945011.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| SFV_RS10200 () | 1873805..1874557 | + | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| SFV_RS10205 () | 1874709..1875659 | + | 951 | WP_001262123.1 | universal stress protein UspE | - |
| SFV_RS25630 () | 1875709..1875966 | - | 258 | Protein_1879 | DUF2534 family protein | - |
| SFV_RS10210 () | 1876166..1877335 | - | 1170 | Protein_1880 | IS3 family transposase | - |
| SFV_RS10220 () | 1877463..1878494 | + | 1032 | WP_000559908.1 | low conductance mechanosensitive channel YnaI | - |
| SFV_RS10225 () | 1878545..1880158 | - | 1614 | WP_000682988.1 | murein tripeptide ABC transporter substrate-binding protein MppA | - |
| SFV_RS10235 () | 1880495..1880962 | - | 468 | Protein_1883 | DNA-binding transcriptional regulator PgrR | - |
| SFV_RS10245 () | 1881026..1882182 | + | 1157 | WP_094081558.1 | IS3 family transposase IS600 | Transposase |
| SFV_RS28545 () | 1882730..1883152 | + | 423 | WP_001249968.1 | hypothetical protein | - |
| SFV_RS10255 () | 1883130..1883402 | + | 273 | WP_001277358.1 | host-nuclease inhibitor protein Gam | - |
| SFV_RS10260 () | 1883432..1884529 | + | 1098 | WP_001173296.1 | AAA family ATPase | - |
| SFV_RS10265 () | 1884580..1884768 | + | 189 | WP_000276807.1 | DUF1187 family protein | - |
| - () | 1884586..1884764 | - | 179 | NuclAT_0 | - | - |
| - () | 1884586..1884764 | - | 179 | NuclAT_0 | - | - |
| - () | 1884586..1884764 | - | 179 | NuclAT_0 | - | - |
| - () | 1884586..1884764 | - | 179 | NuclAT_0 | - | - |
| SFV_RS10275 () | 1884869..1886025 | + | 1157 | WP_094081558.1 | IS3 family transposase IS600 | Transposase |
| SFV_RS25640 () | 1886142..1886423 | + | 282 | WP_094096572.1 | excisionase | - |
| SFV_RS10280 () | 1886389..1887465 | + | 1077 | WP_001189100.1 | hypothetical protein ; Integrase | Integrase |
| - () | 1887596..1887830 | + | 235 | - | - | Antitoxin Detail |
| - () | 1887597..1887700 | - | 104 | - | - | Toxin Detail |
| SFV_RS10290 () | 1887858..1888199 | - | 342 | WP_000976476.1 | YebY family protein | - |
| SFV_RS10295 () | 1888212..1889084 | - | 873 | WP_000879271.1 | copper homeostasis membrane protein CopD | - |
| SFV_RS10300 () | 1889088..1889462 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| SFV_RS10305 () | 1889601..1889831 | + | 231 | WP_000916757.1 | DNA polymerase III subunit theta | - |
| SFV_RS10310 () | 1889933..1890589 | + | 657 | Protein_1896 | carbon-nitrogen hydrolase family protein | - |
| SFV_RS10315 () | 1890613..1891275 | + | 663 | WP_000944267.1 | exodeoxyribonuclease X | - |
| SFV_RS10320 () | 1891272..1893332 | - | 2061 | WP_000936980.1 | oligopeptidase B | - |
| SFV_RS10325 () | 1893541..1894200 | - | 660 | WP_000024752.1 | tellurite resistance TerB family protein | - |
| SFV_RS10335 () | 1894527..1894883 | - | 357 | WP_005062375.1 | protein YebF | - |
| SFV_RS28045 () | 1894950..1895240 | - | 291 | Protein_1901 | DNA damage-inducible protein YebG | - |
| SFV_RS10345 () | 1895374..1896552 | + | 1179 | WP_000173488.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| SFV_RS10350 () | 1896608..1897249 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120364 | NZ_CP037923 | 1317756..1337986 | 0.005 |