MGE detailed information
MGE type: Prophage MGE length: 72787 bp
Accession: NC_007613 Location: 1136751..1209537 Organism: Shigella boydii Sb227 Replicon: chromosome
Accession: NC_007613 Location: 1136751..1209537 Organism: Shigella boydii Sb227 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SBO_RS26590 () | 1132142..1132839 | + | 698 | Protein_1119 | IS1 family transposase | - |
| SBO_RS06260 () | 1132854..1133069 | + | 216 | Protein_1120 | cytochrome C | - |
| SBO_RS06265 () | 1133051..1134433 | + | 1383 | Protein_1121 | trimethylamine N-oxide reductase TorZ | - |
| SBO_RS06270 () | 1134598..1135569 | - | 972 | WP_000564746.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| SBO_RS06275 () | 1135566..1136309 | - | 744 | WP_000019618.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| SBO_RS06280 () | 1136350..1136719 | - | 370 | Protein_1124 | MAPEG family protein | - |
| SBO_RS26595 () | 1136751..1137924 | + | 1174 | Protein_1125 | IS3 family transposase | - |
| SBO_RS06295 () | 1138087..1138296 | + | 210 | WP_001044500.1 | hypothetical protein | - |
| SBO_RS06300 () | 1138324..1138689 | + | 366 | WP_000253098.1 | hypothetical protein | - |
| SBO_RS06305 () | 1138702..1140306 | + | 1605 | WP_000628841.1 | hypothetical protein | - |
| SBO_RS06310 () | 1140677..1141138 | + | 462 | WP_000201268.1 | hypothetical protein | - |
| SBO_RS06315 () | 1141135..1141341 | + | 207 | WP_000979502.1 | helix-turn-helix domain-containing protein | - |
| SBO_RS06320 () | 1141690..1141947 | + | 258 | WP_000288814.1 | antitoxin | Antitoxin Detail |
| SBO_RS06325 () | 1141948..1142265 | + | 318 | WP_000373726.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| SBO_RS30380 () | 1142425..1142571 | - | 147 | WP_000285696.1 | hypothetical protein | - |
| SBO_RS06330 () | 1143130..1143534 | + | 405 | Protein_1134 | hypothetical protein ; Integrase | Integrase |
| SBO_RS06340 () | 1143587..1144800 | + | 1214 | WP_134810244.1 | IS3 family transposase IS629 | Transposase |
| SBO_RS06345 () | 1144968..1145495 | + | 528 | Protein_1136 | hypothetical protein ; Integrase | Integrase |
| - () | 1145616..1145849 | + | 234 | - | - | Antitoxin Detail |
| - () | 1145617..1145720 | - | 104 | - | - | Toxin Detail |
| SBO_RS06355 () | 1145877..1146218 | - | 342 | WP_000976476.1 | YebY family protein | - |
| SBO_RS06360 () | 1146231..1147098 | - | 868 | Protein_1138 | copper homeostasis membrane protein CopD | - |
| SBO_RS06365 () | 1147102..1147476 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| SBO_RS06370 () | 1147615..1147845 | + | 231 | WP_000916761.1 | DNA polymerase III subunit theta | - |
| SBO_RS06375 () | 1147947..1148603 | + | 657 | WP_000011642.1 | carbon-nitrogen hydrolase family protein | - |
| SBO_RS06380 () | 1148627..1149289 | + | 663 | WP_000944260.1 | exodeoxyribonuclease X | - |
| SBO_RS06395 () | 1150635..1151642 | - | 1008 | Protein_1144 | prolyl oligopeptidase family serine peptidase | - |
| SBO_RS26615 () | 1151741..1152915 | + | 1175 | Protein_1145 | IS3 family transposase | - |
| SBO_RS06415 () | 1152940..1153926 | - | 987 | Protein_1146 | oligopeptidase B | - |
| SBO_RS06420 () | 1154135..1154794 | - | 660 | WP_000024738.1 | tellurite resistance TerB family protein | - |
| SBO_RS06430 () | 1155121..1155477 | - | 357 | WP_001295500.1 | protein YebF | - |
| SBO_RS06435 () | 1155544..1155838 | - | 295 | Protein_1149 | DNA damage-inducible protein YebG | - |
| SBO_RS06440 () | 1155972..1157150 | + | 1179 | WP_000173497.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| SBO_RS06445 () | 1157206..1157847 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| SBO_RS06450 () | 1157884..1159695 | - | 1812 | WP_001069475.1 | phosphogluconate dehydratase | - |
| SBO_RS06455 () | 1159930..1161405 | - | 1476 | WP_000301720.1 | glucose-6-phosphate dehydrogenase | - |
| SBO_RS06465 () | 1161743..1162612 | + | 870 | WP_001056706.1 | DNA-binding transcriptional regulator HexR | - |
| SBO_RS06470 () | 1162740..1164182 | + | 1443 | WP_000091148.1 | pyruvate kinase | - |
| SBO_RS06475 () | 1164242..1164460 | - | 219 | WP_000456431.1 | hypothetical protein | - |
| SBO_RS06480 () | 1164578..1165275 | + | 698 | Protein_1157 | IS1 family transposase IS1X2 | Transposase |
| SBO_RS06485 () | 1165286..1165642 | - | 357 | WP_000695219.1 | PPC domain-containing protein | - |
| SBO_RS06495 () | 1165884..1166177 | + | 294 | WP_001297679.1 | YcgL domain-containing protein | - |
| SBO_RS06500 () | 1166249..1166908 | + | 660 | WP_000284277.1 | fumarylacetoacetate hydrolase family protein | - |
| SBO_RS06505 () | 1167000..1167446 | + | 447 | WP_004982928.1 | YcgN family cysteine cluster protein | - |
| SBO_RS06510 () | 1167630..1168327 | + | 698 | Protein_1162 | IS1 family transposase IS1X2 | Transposase |
| SBO_RS06515 () | 1168350..1168589 | + | 240 | Protein_1163 | ATP-binding cassette domain-containing protein | - |
| SBO_RS26625 () | 1168607..1169304 | - | 698 | Protein_1164 | IS1 family transposase IS1X2 | Transposase |
| SBO_RS06530 () | 1169361..1171004 | + | 1644 | Protein_1165 | alpha-mannosidase | - |
| SBO_RS06535 () | 1171093..1172064 | - | 972 | WP_000448395.1 | Lipid A biosynthesis myristoyltransferase | VF |
| SBO_RS06540 () | 1172184..1173506 | - | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| SBO_RS06545 () | 1173522..1174454 | - | 933 | WP_004983046.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| SBO_RS06550 () | 1174533..1175288 | + | 756 | WP_000202996.1 | Zinc import ATP-binding protein ZnuC | VF |
| SBO_RS06555 () | 1175285..1176070 | + | 786 | WP_000571484.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| SBO_RS06560 () | 1176120..1177130 | - | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| SBO_RS06565 () | 1177139..1177750 | - | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| SBO_RS26630 () | 1177889..1177954 | - | 66 | WP_001386853.1 | stress response small protein YobI | - |
| SBO_RS06575 () | 1178146..1178453 | + | 308 | Protein_1174 | IS1 family transposase | - |
| SBO_RS06585 () | 1178545..1179759 | + | 1215 | Protein_1175 | IS3 family transposase | - |
| SBO_RS06590 () | 1179770..1180165 | + | 396 | Protein_1176 | IS1 family transposase IS1X2 | Transposase |
| SBO_RS06595 () | 1180252..1181421 | - | 1170 | Protein_1177 | IS3 family transposase | - |
| SBO_RS06610 () | 1181574..1182095 | - | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| SBO_RS06615 () | 1182130..1182870 | - | 741 | WP_000907252.1 | putative transcriptional regulatory protein YebC | VF |
| SBO_RS06620 () | 1182899..1183351 | - | 453 | WP_011379170.1 | dihydroneopterin triphosphate diphosphatase | - |
| SBO_RS06625 () | 1183469..1185241 | - | 1773 | WP_001258662.1 | aspartate--tRNA ligase | - |
| SBO_RS06630 () | 1185551..1185805 | + | 255 | WP_000891627.1 | isochorismatase family protein | - |
| SBO_RS06635 () | 1185997..1187193 | + | 1197 | WP_011379172.1 | IS110 family transposase ISSfl4 | Transposase |
| SBO_RS06640 () | 1187220..1187567 | + | 348 | Protein_1184 | hydrolase | - |
| SBO_RS06650 () | 1187922..1188170 | + | 249 | WP_001217553.1 | DinI-like family protein | - |
| SBO_RS06655 () | 1188306..1188630 | + | 325 | Protein_1186 | YkgJ family cysteine cluster protein | - |
| SBO_RS06660 () | 1188772..1188984 | - | 213 | WP_001114260.1 | DUF4376 domain-containing protein | - |
| SBO_RS06665 () | 1189060..1189572 | - | 513 | WP_000539253.1 | receptor recognizing protein Gp38 | - |
| SBO_RS26645 () | 1189658..1191065 | - | 1408 | Protein_1189 | prophage tail fiber N-terminal domain-containing protein | - |
| SBO_RS06680 () | 1191130..1191729 | - | 600 | WP_001233068.1 | Outer membrane protein X | VF |
| SBO_RS06685 () | 1191797..1195270 | - | 3474 | WP_000515060.1 | host specificity protein J | - |
| SBO_RS06690 () | 1195511..1196191 | - | 681 | WP_012602254.1 | tail assembly protein | - |
| SBO_RS06695 () | 1196089..1196832 | - | 744 | WP_004983163.1 | C40 family peptidase | - |
| SBO_RS06700 () | 1196843..1197541 | - | 699 | WP_004983175.1 | phage minor tail protein L | - |
| SBO_RS06705 () | 1197541..1197882 | - | 342 | WP_000807924.1 | phage tail protein | - |
| SBO_RS06710 () | 1197875..1201135 | - | 3261 | WP_047930805.1 | phage tail tape measure protein | - |
| SBO_RS06715 () | 1201180..1201494 | + | 315 | WP_000042908.1 | IS66 family transposase ISEc49 | Transposase |
| SBO_RS06720 () | 1201481..1201873 | + | 393 | WP_000950649.1 | IS66 family transposase ISEc49 | Transposase |
| SBO_RS06725 () | 1201880..1203481 | + | 1602 | WP_004983128.1 | IS66 family transposase ISEc49 | Transposase |
| SBO_RS06730 () | 1203616..1203876 | - | 261 | WP_000224021.1 | hypothetical protein | - |
| SBO_RS06735 () | 1203924..1204133 | - | 210 | WP_128566924.1 | DUF4035 domain-containing protein | - |
| SBO_RS06740 () | 1204229..1204603 | - | 375 | WP_000710952.1 | phage tail assembly chaperone | - |
| SBO_RS06745 () | 1204618..1205031 | - | 414 | WP_114142276.1 | immunoglobulin domain-containing protein | - |
| SBO_RS26650 () | 1205024..1205721 | - | 698 | Protein_1204 | IS1 family transposase IS1X2 | Transposase |
| SBO_RS06760 () | 1205778..1206689 | + | 912 | WP_024258032.1 | Arabinose operon regulatory protein | VF |
| SBO_RS26655 () | 1207094..1208261 | - | 1168 | Protein_1206 | IS3 family transposase ISLad1 | Transposase |
| SBO_RS06780 () | 1208422..1208859 | + | 438 | WP_000849049.1 | hypothetical protein | - |
| SBO_RS06785 () | 1208993..1209537 | + | 545 | Protein_1208 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| SBO_RS06790 () | 1209534..1210277 | + | 744 | WP_004983079.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| SBO_RS06795 () | 1210289..1211368 | + | 1080 | WP_024257987.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| SBO_RS06800 () | 1211430..1212365 | + | 936 | WP_000986309.1 | L,D-transpeptidase | - |
| SBO_RS06810 () | 1212823..1213194 | + | 372 | Protein_1212 | LysR family transcriptional regulator | - |
| SBO_RS06815 () | 1213193..1213627 | + | 435 | Protein_1213 | AMP nucleosidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|