Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1145616..1145849 | Replicon | chromosome |
| Accession | NC_007613 | ||
| Organism | Shigella boydii Sb227 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1145617..1145720 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1145616..1145849 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SBO_RS06310 | 1140677..1141138 | + | 462 | WP_000201268.1 | hypothetical protein | - |
| SBO_RS06315 | 1141135..1141341 | + | 207 | WP_000979502.1 | helix-turn-helix domain-containing protein | - |
| SBO_RS06320 | 1141690..1141947 | + | 258 | WP_000288814.1 | antitoxin | - |
| SBO_RS06325 | 1141948..1142265 | + | 318 | WP_000373726.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| SBO_RS30380 | 1142425..1142571 | - | 147 | WP_000285696.1 | hypothetical protein | - |
| SBO_RS06330 | 1143130..1143534 | + | 405 | Protein_1134 | DNA-binding protein | - |
| SBO_RS06340 | 1143587..1144800 | + | 1214 | WP_134810244.1 | IS3 family transposase | - |
| SBO_RS06345 | 1144968..1145495 | + | 528 | Protein_1136 | tyrosine-type recombinase/integrase | - |
| - | 1145616..1145849 | + | 234 | - | - | Antitoxin |
| - | 1145617..1145720 | - | 104 | - | - | Toxin |
| SBO_RS06355 | 1145877..1146218 | - | 342 | WP_000976476.1 | YebY family protein | - |
| SBO_RS06360 | 1146231..1147098 | - | 868 | Protein_1138 | copper homeostasis membrane protein CopD | - |
| SBO_RS06365 | 1147102..1147476 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| SBO_RS06370 | 1147615..1147845 | + | 231 | WP_000916761.1 | DNA polymerase III subunit theta | - |
| SBO_RS06375 | 1147947..1148603 | + | 657 | WP_000011642.1 | carbon-nitrogen hydrolase family protein | - |
| SBO_RS06380 | 1148627..1149289 | + | 663 | WP_000944260.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1136751..1209537 | 72786 | |
| - | inside | IScluster/Tn | - | - | 1143587..1152915 | 9328 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T21342 NC_007613:c1145720-1145617 [Shigella boydii Sb227]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 234 bp
>AT21342 NC_007613:1145616-1145849 [Shigella boydii Sb227]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
