MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 49558 bp
Accession: NC_006855 Location: 1..49558 Organism: Salmonella enterica subsp. enterica serovar Choleraesuis str. Replicon: plasmid pSCV50
Accession: NC_006855 Location: 1..49558 Organism: Salmonella enterica subsp. enterica serovar Choleraesuis str. Replicon: plasmid pSCV50
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SCH_RS23270 () | 1161..2054 | + | 894 | WP_001541536.1 | virulence genes transcriptional activator SpvR | - |
| SCH_RS23275 () | 2228..2392 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| SCH_RS23280 () | 2566..3333 | + | 768 | WP_001541537.1 | virulence protein SpvA | - |
| SCH_RS27475 () | 3296..3463 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| SCH_RS23285 () | 3515..5290 | + | 1776 | WP_001541538.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| SCH_RS23290 () | 5571..6296 | + | 726 | WP_010904474.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| SCH_RS23295 () | 6557..7207 | + | 651 | WP_001541540.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| SCH_RS23300 () | 7334..7759 | - | 426 | WP_000064919.1 | IS200/IS605 family transposase | - |
| SCH_RS23305 () | 7816..8166 | + | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| SCH_RS23310 () | 8233..8792 | - | 560 | Protein_10 | inverse autotransporter beta domain-containing protein | - |
| SCH_RS23320 () | 9512..9997 | - | 486 | WP_000905606.1 | membrane protein | - |
| SCH_RS23325 () | 9991..10500 | - | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| SCH_RS23330 () | 10427..11195 | - | 769 | Protein_13 | EAL domain-containing protein | - |
| SCH_RS23335 () | 11204..11986 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| SCH_RS23340 () | 12021..12542 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| SCH_RS23345 () | 12539..12829 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| SCH_RS23350 () | 12831..13136 | - | 306 | WP_001541545.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| SCH_RS23355 () | 13138..13356 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| SCH_RS23360 () | 14032..14553 | + | 522 | WP_011264020.1 | hypothetical protein | - |
| SCH_RS27480 () | 14597..15025 | - | 429 | Protein_20 | hypothetical protein | - |
| SCH_RS26800 () | 15037..15332 | + | 296 | Protein_21 | cytoplasmic protein | - |
| SCH_RS23375 () | 15826..16815 | + | 990 | WP_000461383.1 | RepB family plasmid replication initiator protein | - |
| SCH_RS26055 () | 17104..17265 | - | 162 | WP_001541548.1 | hypothetical protein | - |
| SCH_RS23380 () | 17318..17704 | - | 387 | WP_001541549.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| SCH_RS23390 () | 18410..18712 | + | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| SCH_RS23395 () | 18987..19505 | + | 519 | WP_000748207.1 | major pilin PefA | - |
| SCH_RS23400 () | 19732..22140 | + | 2409 | WP_001541550.1 | outer membrane usher protein PefC | - |
| SCH_RS23405 () | 22133..22825 | + | 693 | WP_001038509.1 | fimbrial chaperone PefD | - |
| SCH_RS26065 () | 22843..23019 | + | 177 | WP_162299956.1 | hypothetical protein | - |
| SCH_RS23415 () | 23483..24364 | - | 882 | WP_001676666.1 | incFII family plasmid replication initiator RepA | - |
| SCH_RS23420 () | 24345..24422 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| SCH_RS23430 () | 24672..24938 | - | 267 | WP_016710725.1 | replication regulatory protein RepA | - |
| SCH_RS23435 () | 25269..25424 | - | 156 | WP_001719547.1 | hypothetical protein | - |
| SCH_RS26810 () | 25440..25713 | - | 274 | Protein_34 | disulfide bond formation protein DsbA | - |
| SCH_RS23445 () | 25830..26393 | - | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| SCH_RS23450 () | 26448..27188 | - | 741 | WP_000177630.1 | conjugal transfer pilus acetylase TraX | - |
| SCH_RS23460 () | 27208..29703 | - | 2496 | Protein_37 | conjugative relaxase | - |
| SCH_RS23465 () | 29785..30012 | + | 228 | WP_000450263.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| SCH_RS23470 () | 30012..30410 | + | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| SCH_RS23475 () | 30419..32617 | - | 2199 | WP_001541557.1 | type IV conjugative transfer system coupling protein TraD | - |
| SCH_RS23480 () | 32989..33720 | - | 732 | WP_001541558.1 | complement resistance protein TraT | - |
| SCH_RS24395 () | 34023..34265 | - | 243 | WP_024131413.1 | hypothetical protein | - |
| SCH_RS23490 () | 34262..34963 | - | 702 | WP_148201696.1 | hypothetical protein | - |
| SCH_RS23495 () | 35265..35687 | + | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| SCH_RS23500 () | 35687..36961 | + | 1275 | WP_001541560.1 | Y-family DNA polymerase | - |
| SCH_RS23505 () | 37043..38017 | - | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| SCH_RS23510 () | 38017..39222 | - | 1206 | WP_000427676.1 | AAA family ATPase | - |
| SCH_RS23515 () | 39637..40578 | + | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| SCH_RS23520 () | 40610..41176 | - | 567 | WP_001541562.1 | DUF2913 family protein | - |
| SCH_RS23525 () | 41233..41568 | - | 336 | WP_001541563.1 | hypothetical protein | - |
| SCH_RS23530 () | 41752..42168 | - | 417 | WP_001541564.1 | hypothetical protein | - |
| SCH_RS23535 () | 42254..43369 | - | 1116 | WP_001247118.1 | DNA-binding protein | - |
| SCH_RS23540 () | 43814..44116 | + | 303 | WP_014411932.1 | hypothetical protein | - |
| SCH_RS23545 () | 44771..45511 | + | 741 | WP_001541566.1 | carbonic anhydrase | - |
| SCH_RS23550 () | 45718..46278 | + | 561 | WP_010904491.1 | recombinase family protein | - |
| SCH_RS23555 () | 46262..47926 | + | 1665 | WP_000098783.1 | IS481 family transposase | - |
| SCH_RS23560 () | 47859..48884 | + | 1026 | WP_077905935.1 | ExeA family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|