MGE detailed information
MGE type: Genomic_island MGE length: 21037 bp
Accession: NC_004741 Location: 4163334..4184370 Organism: Shigella flexneri 2a str. 2457T Replicon: chromosome
Accession: NC_004741 Location: 4163334..4184370 Organism: Shigella flexneri 2a str. 2457T Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| S_RS22125 () | 4158446..4158781 | + | 336 | WP_000626187.1 | universal stress protein UspB | - |
| S_RS22130 () | 4158852..4160351 | - | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| S_RS22135 () | 4160583..4161782 | + | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| S_RS22145 () | 4162311..4163008 | + | 698 | Protein_4035 | IS1 family transposase | - |
| S_RS22150 () | 4163026..4163318 | - | 293 | Protein_4036 | transposase | - |
| S_RS22155 () | 4163334..4164608 | + | 1275 | WP_005052544.1 | O-antigen ligase family protein | - |
| S_RS22160 () | 4164608..4165342 | + | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| S_RS22165 () | 4165810..4166571 | + | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| S_RS22170 () | 4166615..4167694 | + | 1080 | WP_005052551.1 | F1 capsule-anchoring protein | VF |
| S_RS27240 () | 4167691..4167978 | + | 288 | WP_077696389.1 | hypothetical protein | VF |
| S_RS22185 () | 4169269..4170417 | + | 1149 | WP_005052604.1 | F1 capsule-anchoring protein | VF |
| S_RS22190 () | 4170568..4171068 | + | 501 | WP_167389531.1 | hypothetical protein | - |
| S_RS22195 () | 4171175..4171936 | - | 762 | WP_011069549.1 | hypothetical protein | VF |
| S_RS22200 () | 4172182..4172946 | + | 765 | WP_000442141.1 | winged helix-turn-helix domain-containing protein | - |
| S_RS22205 () | 4172939..4173415 | + | 477 | WP_000182502.1 | hypothetical protein | - |
| S_RS22210 () | 4173502..4174533 | - | 1032 | Protein_4048 | DUF2776 domain-containing protein | - |
| S_RS22225 () | 4174918..4176507 | + | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| S_RS22230 () | 4176769..4178391 | + | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| S_RS28915 () | 4178581..4178694 | + | 114 | WP_001296785.1 | protein YhiY | - |
| S_RS22235 () | 4178757..4179824 | + | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| S_RS22240 () | 4179821..4182556 | + | 2736 | WP_000149173.1 | Ribosome-associated ATPase | VF |
| S_RS22245 () | 4182556..4183680 | + | 1125 | WP_001216257.1 | ABC transporter permease | - |
| S_RS22250 () | 4183739..4184014 | + | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| S_RS22255 () | 4184011..4184370 | + | 360 | WP_000593553.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| S_RS22260 () | 4184490..4184891 | - | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| S_RS22265 () | 4184897..4185703 | - | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| S_RS22270 () | 4185700..4186464 | - | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| S_RS22275 () | 4186464..4187297 | - | 834 | WP_001008973.1 | nickel ABC transporter permease subunit NikC | - |
| S_RS22280 () | 4187294..4188238 | - | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.001 |