MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 161613 bp
Accession: NC_004349 Location: 1..161613 Organism: Shewanella oneidensis MR-1 Replicon: plasmid megaplasmid
Accession: NC_004349 Location: 1..161613 Organism: Shewanella oneidensis MR-1 Replicon: plasmid megaplasmid
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SO_RS22135 () | 608..1489 | + | 882 | WP_011074341.1 | replication protein RepA | - |
| SO_RS22140 () | 1833..2048 | + | 216 | WP_164925943.1 | hypothetical protein | - |
| SO_RS22145 () | 2651..2878 | + | 228 | WP_011074342.1 | helix-turn-helix transcriptional regulator | - |
| SO_RS22150 () | 2887..3933 | + | 1047 | WP_011074343.1 | type II restriction endonuclease | - |
| SO_RS22155 () | 3938..5629 | - | 1692 | WP_164925953.1 | N-6 DNA methylase | - |
| SO_RS22160 () | 5714..6019 | - | 306 | WP_011074345.1 | hypothetical protein | - |
| SO_RS22165 () | 6037..6813 | - | 777 | WP_011074346.1 | Sporulation initiation inhibitor protein Soj | VF |
| SO_RS22170 () | 7113..7850 | + | 738 | WP_011074347.1 | hypothetical protein | - |
| SO_RS22175 () | 7945..8559 | + | 615 | WP_164925954.1 | hypothetical protein | - |
| SO_RS22180 () | 8573..8818 | + | 246 | WP_011074349.1 | hypothetical protein | - |
| SO_RS22185 () | 8805..9323 | + | 519 | WP_011074350.1 | metal-dependent hydrolase | - |
| SO_RS22190 () | 9465..9707 | + | 243 | WP_011074351.1 | hypothetical protein | - |
| SO_RS22195 () | 9742..9948 | + | 207 | WP_011074455.1 | hypothetical protein | - |
| SO_RS22200 () | 10078..11334 | - | 1257 | WP_011074352.1 | Y-family DNA polymerase | - |
| SO_RS22205 () | 11335..11739 | - | 405 | WP_011074353.1 | DNA polymerase V | - |
| SO_RS22210 () | 12220..12432 | + | 213 | WP_164925944.1 | hypothetical protein | - |
| SO_RS22215 () | 12945..15911 | - | 2967 | WP_011074356.1 | Tn3 family transposase TnpA_ISSod9 | Transposase |
| SO_RS22220 () | 16075..16365 | + | 291 | WP_011074357.1 | nucleotidyltransferase | - |
| SO_RS22225 () | 16362..16739 | + | 378 | WP_011074358.1 | DUF86 domain-containing protein | - |
| SO_RS22230 () | 16733..17290 | + | 558 | WP_011074359.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| SO_RS22235 () | 17324..18154 | + | 831 | Protein_20 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| SO_RS22240 () | 18187..18462 | + | 276 | Protein_21 | IS3 family transposase ISSba3 | Transposase |
| SO_RS22245 () | 18774..19079 | + | 306 | WP_011074360.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SO_RS22250 () | 19154..19453 | + | 300 | WP_011074361.1 | HigA family addiction module antidote protein | - |
| SO_RS22260 () | 20759..21070 | - | 312 | Protein_25 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| SO_RS22265 () | 21138..22297 | + | 1160 | WP_141135407.1 | IS3 family transposase ISSod1 | Transposase |
| SO_RS22270 () | 22779..24653 | + | 1875 | WP_011074367.1 | ParB/RepB/Spo0J family partition protein | - |
| SO_RS22275 () | 24778..25233 | + | 456 | WP_011074368.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| SO_RS22280 () | 25379..25723 | + | 345 | WP_164925955.1 | hypothetical protein | - |
| SO_RS22285 () | 25754..25975 | + | 222 | WP_011074370.1 | hypothetical protein | - |
| SO_RS22290 () | 26127..27329 | - | 1203 | WP_005054087.1 | IS256 family transposase ISSod4 | Transposase |
| SO_RS22295 () | 27384..27656 | + | 273 | Protein_32 | GNAT family N-acetyltransferase | - |
| SO_RS22300 () | 27769..27996 | + | 228 | WP_011979515.1 | hypothetical protein | - |
| SO_RS22310 () | 29583..30668 | + | 1086 | WP_164925956.1 | DUF3560 domain-containing protein | - |
| SO_RS22315 () | 30832..31083 | + | 252 | WP_011074373.1 | antitoxin | - |
| SO_RS22320 () | 31077..31394 | + | 318 | WP_011074374.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| SO_RS22325 () | 31539..32027 | + | 489 | WP_011074375.1 | hypothetical protein | - |
| SO_RS22330 () | 32496..33626 | + | 1131 | WP_011074377.1 | site-specific integrase | - |
| SO_RS22335 () | 33623..34993 | + | 1371 | WP_011074378.1 | site-specific integrase | - |
| SO_RS22340 () | 35916..37844 | - | 1929 | WP_011074381.1 | S9 family peptidase | - |
| SO_RS22345 () | 38327..38530 | - | 204 | WP_011074457.1 | bacteriocin-like peptide | - |
| SO_RS22350 () | 38542..38751 | - | 210 | WP_011074458.1 | bacteriocin-like peptide | - |
| SO_RS22355 () | 38936..41113 | - | 2178 | WP_011074382.1 | Toxin RTX-I translocation ATP-binding protein | VF |
| SO_RS22360 () | 41113..42360 | - | 1248 | WP_011074383.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| SO_RS22365 () | 43722..44090 | + | 369 | WP_011074384.1 | hypothetical protein | - |
| SO_RS22370 () | 44152..45012 | - | 861 | WP_164925945.1 | toprim domain-containing protein | - |
| SO_RS22375 () | 45061..46220 | + | 1160 | WP_141135407.1 | IS3 family transposase ISSod1 | Transposase |
| SO_RS22380 () | 46156..46482 | - | 327 | WP_193378421.1 | hypothetical protein | - |
| SO_RS22385 () | 46611..46793 | + | 183 | WP_011074385.1 | hypothetical protein | - |
| SO_RS22390 () | 47238..47987 | + | 750 | WP_011074387.1 | hypothetical protein | - |
| SO_RS22395 () | 48737..49027 | + | 291 | WP_011074388.1 | DUF1778 domain-containing protein | - |
| SO_RS22400 () | 49031..49558 | + | 528 | WP_011074389.1 | GNAT family N-acetyltransferase | - |
| SO_RS22405 () | 49745..50431 | + | 687 | WP_011074390.1 | hypothetical protein | VF |
| SO_RS22410 () | 50424..50783 | + | 360 | WP_011074391.1 | hypothetical protein | - |
| SO_RS22415 () | 50928..51485 | + | 558 | WP_011074392.1 | IS6 family transposase ISSod8 | Transposase |
| SO_RS22420 () | 51674..52591 | - | 918 | Protein_57 | IS256 family transposase ISSod4 | Transposase |
| SO_RS22425 () | 52829..53988 | + | 1160 | WP_141135407.1 | IS3 family transposase ISSod1 | Transposase |
| SO_RS22430 () | 53996..54424 | - | 429 | Protein_59 | hypothetical protein | - |
| SO_RS22435 () | 54504..55382 | - | 879 | WP_011074393.1 | hypothetical protein | - |
| SO_RS22440 () | 55521..55808 | - | 288 | WP_011074394.1 | transcriptional regulator | - |
| SO_RS22445 () | 55805..56140 | - | 336 | WP_011074395.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SO_RS22450 () | 56571..57275 | - | 705 | WP_011074396.1 | DUF2931 family protein | - |
| SO_RS22455 () | 57546..57962 | - | 417 | WP_011074397.1 | transcriptional regulator | Antitoxin Detail |
| SO_RS22460 () | 57968..58279 | - | 312 | WP_011074398.1 | type II toxin-antitoxin system HigB family toxin | Toxin Detail |
| SO_RS22465 () | 58421..58657 | - | 237 | Protein_66 | IS5/IS1182 family transposase | - |
| SO_RS22470 () | 58734..59492 | - | 759 | WP_011071076.1 | IS5 family transposase ISSod6 | Transposase |
| SO_RS22475 () | 59527..59880 | - | 354 | WP_164925946.1 | hypothetical protein | - |
| SO_RS22480 () | 59873..60175 | - | 303 | WP_164925947.1 | hypothetical protein | - |
| SO_RS22485 () | 60346..60981 | - | 636 | WP_011074400.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| SO_RS22490 () | 61181..61423 | + | 243 | WP_011074401.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| SO_RS22495 () | 61416..61715 | + | 300 | WP_011074402.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SO_RS22500 () | 62110..62595 | - | 486 | WP_011074403.1 | immunity 26/phosphotriesterase HocA family protein | - |
| SO_RS22505 () | 62700..62918 | - | 219 | Protein_74 | IS3 family transposase ISSba3 | Transposase |
| SO_RS22510 () | 62973..63281 | - | 309 | Protein_75 | IS6 family transposase ISSba18 | Transposase |
| SO_RS22515 () | 63339..64541 | + | 1203 | WP_005054087.1 | IS256 family transposase ISSod4 | Transposase |
| SO_RS22520 () | 64574..64960 | - | 387 | Protein_77 | IS6 family transposase ISSod8 | Transposase |
| SO_RS22525 () | 65042..65566 | - | 525 | WP_164925948.1 | hypothetical protein | - |
| SO_RS22530 () | 65893..66451 | - | 559 | Protein_79 | IS6 family transposase ISSod8 | Transposase |
| SO_RS22535 () | 66535..67125 | - | 591 | WP_011074405.1 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| SO_RS22540 () | 67295..67555 | + | 261 | WP_011074406.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| SO_RS22545 () | 67555..67866 | + | 312 | WP_011074407.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SO_RS22550 () | 67890..69248 | + | 1359 | Protein_83 | DUF4158 domain-containing protein | - |
| SO_RS22555 () | 69314..70473 | + | 1160 | WP_141135407.1 | IS3 family transposase ISSod1 | Transposase |
| SO_RS22560 () | 70482..72206 | + | 1725 | Protein_85 | Tn3 family transposase ISKox2 | Transposase |
| SO_RS22565 () | 72253..73026 | + | 774 | Protein_86 | IS4 family transposase ISSod3 | Transposase |
| SO_RS22570 () | 73412..74611 | + | 1200 | WP_011074409.1 | hypothetical protein | VF |
| SO_RS22575 () | 74611..75705 | + | 1095 | WP_011074410.1 | chromosome partitioning protein ParB | - |
| SO_RS22580 () | 75737..76495 | - | 759 | WP_011071076.1 | IS5 family transposase ISSod6 | Transposase |
| SO_RS22585 () | 77039..77434 | + | 396 | WP_011074411.1 | potassium channel family protein | - |
| SO_RS22590 () | 77713..79446 | + | 1734 | WP_011074412.1 | amidohydrolase | - |
| SO_RS22595 () | 79656..81470 | - | 1815 | WP_011074413.1 | amidohydrolase | - |
| SO_RS22600 () | 81706..82791 | - | 1086 | Protein_93 | IS256 family transposase ISSod4 | Transposase |
| SO_RS22605 () | 82900..84114 | + | 1215 | WP_011070548.1 | IS4 family transposase ISSod3 | Transposase |
| SO_RS22610 () | 84109..84255 | - | 147 | WP_164925942.1 | IS256 family transposase ISSod4 | Transposase |
| SO_RS22615 () | 84452..85009 | + | 558 | WP_011074415.1 | IS6 family transposase ISSod8 | Transposase |
| SO_RS22620 () | 85324..86964 | + | 1641 | WP_011074416.1 | hypothetical protein | VF |
| SO_RS22625 () | 87063..87401 | + | 339 | WP_164925949.1 | SMI1/KNR4 family protein | - |
| SO_RS22630 () | 88762..89148 | + | 387 | WP_011074417.1 | hypothetical protein | - |
| SO_RS22635 () | 89170..89901 | + | 732 | WP_011074418.1 | EAL domain-containing protein | - |
| SO_RS22640 () | 90085..94311 | + | 4227 | WP_011074419.1 | tandem-95 repeat protein | - |
| SO_RS22645 () | 94602..98834 | + | 4233 | WP_011074420.1 | tandem-95 repeat protein | - |
| SO_RS22650 () | 98834..99151 | + | 318 | Protein_103 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| SO_RS23140 () | 99408..100436 | + | 1029 | WP_011074421.1 | Outer membrane protein A | VF |
| SO_RS22660 () | 100525..104757 | + | 4233 | WP_011074420.1 | tandem-95 repeat protein | - |
| SO_RS22665 () | 104878..105066 | + | 189 | Protein_106 | IS5 family transposase ISSod6 | Transposase |
| SO_RS22670 () | 105074..105271 | - | 198 | Protein_107 | IS5 family transposase ISSod6 | Transposase |
| SO_RS22675 () | 105329..106091 | + | 763 | Protein_108 | IS3 family transposase ISShes13 | Transposase |
| SO_RS22680 () | 106121..106579 | - | 459 | WP_164925950.1 | GNAT family N-acetyltransferase | - |
| SO_RS22685 () | 106554..107594 | + | 1041 | WP_011073373.1 | IS481 family transposase ISSod13 | Transposase |
| SO_RS22690 () | 107663..107833 | + | 171 | Protein_111 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SO_RS22695 () | 107889..108812 | - | 924 | WP_011074424.1 | IS5 family transposase ISSod12 | Transposase |
| SO_RS22700 () | 109108..109497 | + | 390 | WP_011074426.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| SO_RS22705 () | 109790..109876 | - | 87 | Protein_114 | helix-turn-helix domain-containing protein | - |
| SO_RS22710 () | 109989..110800 | - | 812 | Protein_115 | IS5 family transposase | - |
| SO_RS22715 () | 110955..111219 | - | 265 | Protein_116 | IS5 family transposase ISSpu11 | Transposase |
| SO_RS22720 () | 111531..112563 | - | 1033 | Protein_117 | IS110-like element ISSod21 family transposase | - |
| SO_RS22725 () | 113127..114279 | + | 1153 | WP_076611921.1 | IS3 family transposase ISSod17 | Transposase |
| SO_RS22730 () | 114492..115694 | - | 1203 | WP_011074430.1 | IS256 family transposase ISSod4 | Transposase |
| SO_RS22735 () | 116108..116518 | - | 411 | WP_011074431.1 | hypothetical protein | - |
| SO_RS22740 () | 116515..116973 | - | 459 | WP_011074432.1 | hypothetical protein | VF |
| SO_RS22745 () | 117258..118199 | - | 942 | Protein_122 | IS3-like element ISSod24 family transposase | - |
| SO_RS22750 () | 118260..118715 | + | 456 | Protein_123 | IS6 family transposase ISSba18 | Transposase |
| SO_RS22755 () | 118856..120610 | + | 1755 | WP_164925951.1 | sel1 repeat family protein | - |
| SO_RS22760 () | 120598..121812 | - | 1215 | WP_011070548.1 | IS4 family transposase ISSod3 | Transposase |
| SO_RS22765 () | 122089..122331 | + | 243 | WP_193378422.1 | hypothetical protein | - |
| SO_RS22770 () | 122472..124957 | + | 2486 | Protein_127 | hypothetical protein | - |
| SO_RS22775 () | 125218..126186 | + | 969 | WP_011074433.1 | hypothetical protein | - |
| SO_RS22780 () | 126482..128746 | + | 2265 | WP_164925958.1 | hypothetical protein | - |
| SO_RS22785 () | 128755..130485 | + | 1731 | WP_011074435.1 | hypothetical protein | - |
| SO_RS22790 () | 130884..131924 | + | 1041 | WP_011073373.1 | IS481 family transposase ISSod13 | Transposase |
| SO_RS22795 () | 132070..132270 | - | 201 | Protein_132 | IS3 family transposase ISSod1 | Transposase |
| SO_RS22800 () | 132330..133532 | + | 1203 | WP_005054087.1 | IS256 family transposase ISSod4 | Transposase |
| SO_RS22805 () | 133566..134530 | - | 965 | Protein_134 | IS3 family transposase ISSod1 | Transposase |
| SO_RS22810 () | 135800..136192 | + | 393 | WP_011074462.1 | DUF5086 family protein | - |
| SO_RS22815 () | 136567..137412 | + | 846 | WP_164925959.1 | MBL fold metallo-hydrolase | - |
| SO_RS22820 () | 137525..138223 | + | 699 | WP_006081628.1 | DUF2931 family protein | - |
| SO_RS22825 () | 138290..139330 | - | 1041 | WP_011073373.1 | IS481 family transposase ISSod13 | Transposase |
| SO_RS22830 () | 139907..140092 | - | 186 | Protein_139 | transcriptional regulator | - |
| SO_RS22835 () | 140089..140268 | - | 180 | WP_011074440.1 | IS3 family transposase ISSpu1 | Transposase |
| SO_RS22840 () | 140488..143625 | - | 3138 | WP_011074441.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| SO_RS22845 () | 143635..145176 | - | 1542 | WP_011074442.1 | efflux RND transporter periplasmic adaptor subunit | - |
| SO_RS22850 () | 145198..145458 | - | 261 | WP_011074443.1 | hypothetical protein | - |
| SO_RS22855 () | 145735..146172 | - | 438 | WP_164925952.1 | hypothetical protein | - |
| SO_RS22860 () | 146282..146737 | - | 456 | WP_011074445.1 | DUF2057 family protein | - |
| SO_RS22865 () | 146804..147193 | - | 390 | WP_011074446.1 | hypothetical protein | - |
| SO_RS22870 () | 147492..147818 | - | 327 | WP_011074447.1 | multidrug efflux SMR transporter | - |
| SO_RS22875 () | 148058..148897 | - | 840 | WP_011074448.1 | S-formylglutathione hydrolase | - |
| SO_RS22880 () | 148985..150115 | - | 1131 | WP_011074449.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| SO_RS22885 () | 150372..151130 | - | 759 | WP_011071076.1 | IS5 family transposase ISSod6 | Transposase |
| SO_RS22890 () | 151208..151426 | - | 219 | WP_164925960.1 | TraR/DksA family transcriptional regulator | - |
| SO_RS22895 () | 151984..152541 | - | 558 | Protein_152 | S-(hydroxymethyl)glutathione synthase | - |
| SO_RS22900 () | 152606..153757 | - | 1152 | WP_011074450.1 | Alcohol dehydrogenase 2 | VF |
| SO_RS22905 () | 154093..154962 | + | 870 | WP_011074451.1 | HTH-type transcriptional regulator DmlR | VF |
| SO_RS22910 () | 155026..155271 | - | 246 | Protein_155 | transposase | - |
| SO_RS22915 () | 155302..158268 | - | 2967 | WP_011074356.1 | Tn3 family transposase TnpA_ISSod9 | Transposase |
| SO_RS22920 () | 158432..158722 | + | 291 | WP_011074357.1 | nucleotidyltransferase | - |
| SO_RS22925 () | 158719..159096 | + | 378 | WP_011074358.1 | DUF86 domain-containing protein | - |
| SO_RS22930 () | 159090..159647 | + | 558 | WP_011074359.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| SO_RS22935 () | 160178..160804 | - | 627 | WP_011074453.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| SO_RS22940 () | 160979..161245 | - | 267 | WP_011074454.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|