MGE detailed information
MGE type: Prophage MGE length: 128163 bp
Accession: NC_002976 Location: 1566662..1694824 Organism: Staphylococcus epidermidis RP62A Replicon: chromosome
Accession: NC_002976 Location: 1566662..1694824 Organism: Staphylococcus epidermidis RP62A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SERP_RS07540 () | 1562172..1563644 | - | 1473 | WP_001830011.1 | sucrose-6-phosphate hydrolase | - |
| SERP_RS07545 () | 1563904..1564857 | - | 954 | WP_001830022.1 | LacI family DNA-binding transcriptional regulator | - |
| SERP_RS07550 () | 1564992..1566242 | - | 1251 | WP_002505947.1 | ammonium transporter | - |
| SERP_RS07555 () | 1566662..1566886 | - | 225 | WP_001830019.1 | sulfurtransferase TusA family protein | - |
| SERP_RS07560 () | 1566938..1567693 | - | 756 | Protein_1426 | YeeE/YedE family protein | - |
| SERP_RS07565 () | 1567768..1569306 | - | 1539 | WP_001260014.1 | hypothetical protein ; Integrase | Integrase |
| SERP_RS07570 () | 1569296..1569877 | - | 582 | WP_002504503.1 | DNA-binding protein | - |
| SERP_RS07575 () | 1570079..1570672 | - | 594 | WP_001130902.1 | RusA family crossover junction endodeoxyribonuclease | - |
| SERP_RS07580 () | 1570656..1571051 | - | 396 | WP_002504504.1 | hypothetical protein | - |
| SERP_RS07585 () | 1571053..1571799 | - | 747 | WP_002504505.1 | NTP pyrophosphohydrolase | - |
| SERP_RS07590 () | 1571812..1572051 | - | 240 | WP_002504506.1 | hypothetical protein | - |
| SERP_RS07595 () | 1572067..1572315 | - | 249 | WP_002504507.1 | thioredoxin family protein | - |
| SERP_RS07600 () | 1572356..1572958 | - | 603 | WP_002504508.1 | AAA family ATPase | - |
| SERP_RS07605 () | 1572986..1574008 | - | 1023 | WP_002504509.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| SERP_RS07610 () | 1574054..1574422 | - | 369 | Protein_1436 | intein-containing ribonucleoside-diphosphate reductase subunit alpha | - |
| SERP_RS07615 () | 1574601..1575425 | - | 825 | WP_002504510.1 | NUMOD4 motif-containing HNH endonuclease | - |
| SERP_RS07620 () | 1575582..1578488 | - | 2907 | Protein_1438 | intein-containing class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| SERP_RS07625 () | 1578510..1578956 | - | 447 | WP_002504512.1 | hypothetical protein | - |
| SERP_RS07630 () | 1578956..1579369 | - | 414 | WP_002504513.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| SERP_RS14000 () | 1579399..1579551 | - | 153 | WP_002504514.1 | hypothetical protein | - |
| SERP_RS07635 () | 1579570..1580271 | - | 702 | WP_010959216.1 | hypothetical protein | - |
| SERP_RS07640 () | 1580283..1580792 | - | 510 | WP_002504516.1 | siphovirus Gp157 family protein | - |
| SERP_RS07645 () | 1580918..1581514 | - | 597 | WP_002504517.1 | hypothetical protein | - |
| SERP_RS07650 () | 1581514..1581744 | - | 231 | WP_000824898.1 | hypothetical protein | - |
| SERP_RS07655 () | 1581758..1581940 | - | 183 | WP_000356944.1 | hypothetical protein | - |
| SERP_RS07660 () | 1581943..1582296 | - | 354 | WP_000792728.1 | hypothetical protein | - |
| SERP_RS07665 () | 1582329..1583327 | - | 999 | WP_000598581.1 | DNA cytosine methyltransferase | - |
| SERP_RS07670 () | 1583342..1584028 | - | 687 | WP_002504519.1 | methyltransferase domain-containing protein | - |
| SERP_RS07675 () | 1584018..1584209 | - | 192 | WP_002504520.1 | hypothetical protein | - |
| SERP_RS07680 () | 1584202..1584813 | - | 612 | WP_002504521.1 | nucleoside 2-deoxyribosyltransferase | - |
| SERP_RS07685 () | 1584828..1585010 | - | 183 | WP_002504522.1 | hypothetical protein | - |
| SERP_RS07690 () | 1585010..1585261 | - | 252 | WP_000865652.1 | hypothetical protein | - |
| SERP_RS07695 () | 1585267..1585591 | - | 325 | Protein_1454 | hypothetical protein | - |
| SERP_RS07700 () | 1585572..1585859 | - | 288 | WP_002504525.1 | hypothetical protein | - |
| SERP_RS07705 () | 1585852..1586118 | - | 267 | WP_002504526.1 | hypothetical protein | - |
| SERP_RS14005 () | 1586130..1586303 | - | 174 | WP_000119719.1 | hypothetical protein | - |
| SERP_RS07710 () | 1586417..1586806 | - | 390 | WP_002504527.1 | hypothetical protein | - |
| SERP_RS07715 () | 1586894..1588192 | - | 1299 | WP_010959221.1 | ATP-dependent DNA ligase | - |
| SERP_RS07720 () | 1588202..1588516 | - | 315 | WP_002504529.1 | hypothetical protein | - |
| SERP_RS07725 () | 1588654..1589034 | - | 381 | WP_002504530.1 | hypothetical protein | - |
| SERP_RS07730 () | 1589146..1591632 | - | 2487 | WP_010959222.1 | hypothetical protein | - |
| SERP_RS07735 () | 1592095..1593543 | - | 1449 | WP_010959223.1 | PHP domain-containing protein | - |
| SERP_RS07740 () | 1593556..1593930 | - | 375 | WP_002504533.1 | hypothetical protein | - |
| SERP_RS07745 () | 1594097..1594657 | + | 561 | WP_002504534.1 | hypothetical protein | - |
| SERP_RS07750 () | 1595010..1595414 | + | 405 | WP_002504535.1 | YolD-like family protein | - |
| SERP_RS07755 () | 1595662..1596303 | - | 642 | WP_002504537.1 | hypothetical protein | - |
| SERP_RS07760 () | 1596409..1597131 | - | 723 | WP_002504538.1 | hypothetical protein | - |
| SERP_RS07765 () | 1597240..1598040 | - | 801 | WP_000686449.1 | metallophosphoesterase | - |
| SERP_RS07770 () | 1598044..1598538 | - | 495 | WP_010959224.1 | hypothetical protein | - |
| SERP_RS07775 () | 1598595..1598864 | - | 270 | WP_000755772.1 | hypothetical protein | - |
| SERP_RS07780 () | 1598848..1599039 | - | 192 | WP_002504556.1 | hypothetical protein | - |
| SERP_RS07785 () | 1599342..1599737 | - | 396 | WP_002504557.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| SERP_RS07790 () | 1599737..1599967 | - | 231 | WP_002504558.1 | addiction module antitoxin | Antitoxin Detail |
| SERP_RS07795 () | 1600130..1600648 | - | 519 | WP_002504559.1 | metallophosphoesterase | - |
| SERP_RS07800 () | 1600648..1601298 | - | 651 | WP_002504560.1 | hypothetical protein | - |
| SERP_RS07805 () | 1601298..1601615 | - | 318 | WP_002504561.1 | hypothetical protein | - |
| SERP_RS07810 () | 1601608..1602333 | - | 726 | WP_010959229.1 | metallophosphoesterase | - |
| SERP_RS07815 () | 1602333..1602554 | - | 222 | WP_002504563.1 | hypothetical protein | - |
| SERP_RS14010 () | 1602574..1602750 | - | 177 | WP_002504564.1 | hypothetical protein | - |
| SERP_RS07820 () | 1602743..1603285 | - | 543 | WP_002504565.1 | hypothetical protein | - |
| SERP_RS07825 () | 1603301..1603573 | - | 273 | WP_002504566.1 | hypothetical protein | - |
| SERP_RS07830 () | 1603599..1603754 | - | 156 | WP_002504567.1 | transcriptional activator RinB | - |
| SERP_RS07835 () | 1603751..1604035 | - | 285 | WP_002504568.1 | hypothetical protein | - |
| SERP_RS07840 () | 1604051..1604236 | - | 186 | WP_001187008.1 | hypothetical protein | - |
| SERP_RS07845 () | 1604221..1604400 | - | 180 | WP_002504569.1 | hypothetical protein | - |
| SERP_RS07850 () | 1604416..1604898 | - | 483 | WP_002504570.1 | hypothetical protein | - |
| SERP_RS07855 () | 1604900..1605088 | - | 189 | WP_002504571.1 | Lar family restriction alleviation protein | - |
| SERP_RS07860 () | 1605095..1605298 | - | 204 | WP_002504572.1 | hypothetical protein | - |
| SERP_RS07865 () | 1605303..1605569 | - | 267 | WP_002504573.1 | hypothetical protein | - |
| SERP_RS07870 () | 1605591..1605866 | - | 276 | WP_002504574.1 | hypothetical protein | - |
| SERP_RS07875 () | 1605889..1606128 | - | 240 | WP_002504575.1 | hypothetical protein | - |
| SERP_RS07880 () | 1606150..1606374 | - | 225 | WP_000359469.1 | hypothetical protein | - |
| SERP_RS07885 () | 1606380..1606727 | - | 348 | WP_000862563.1 | thermonuclease family protein | - |
| SERP_RS07890 () | 1606724..1607134 | - | 411 | WP_002504576.1 | hypothetical protein | - |
| SERP_RS07895 () | 1607174..1607437 | - | 264 | WP_000312937.1 | hypothetical protein | - |
| SERP_RS07900 () | 1607440..1607748 | - | 309 | WP_002504577.1 | hypothetical protein | - |
| SERP_RS07905 () | 1608040..1608315 | - | 276 | WP_002504579.1 | hypothetical protein | - |
| SERP_RS07910 () | 1608328..1608525 | - | 198 | WP_002504580.1 | hypothetical protein | - |
| SERP_RS07915 () | 1608536..1609582 | - | 1047 | WP_002504581.1 | hypothetical protein | - |
| SERP_RS07920 () | 1609626..1610300 | + | 675 | WP_001106022.1 | IS6 family transposase IS257R1 | Transposase |
| SERP_RS07925 () | 1610356..1610754 | - | 399 | Protein_1502 | DegV family protein | - |
| SERP_RS07930 () | 1610764..1611249 | - | 486 | WP_000175735.1 | trimethoprim-resistant dihydrofolate reductase DfrC | - |
| SERP_RS07935 () | 1611291..1612247 | - | 957 | WP_000282655.1 | thymidylate synthase | - |
| SERP_RS07940 () | 1612361..1612663 | + | 303 | Protein_1505 | IS6 family transposase IS257R2 | Transposase |
| SERP_RS07945 () | 1612762..1613934 | + | 1173 | WP_000195429.1 | IS256 family transposase IS256 | Transposase |
| SERP_RS07950 () | 1614064..1615503 | - | 1440 | WP_001028144.1 | Bifunctional AAC/APH | ARG |
| SERP_RS07955 () | 1615504..1615896 | - | 393 | WP_000393259.1 | GNAT family N-acetyltransferase | - |
| SERP_RS07960 () | 1615953..1617125 | - | 1173 | WP_000195429.1 | IS256 family transposase IS256 | Transposase |
| SERP_RS07965 () | 1617227..1617610 | + | 384 | Protein_1510 | IS6 family transposase IS431mec | Transposase |
| SERP_RS07970 () | 1617909..1618646 | - | 738 | WP_010959234.1 | ribonuclease Z | - |
| SERP_RS07975 () | 1618839..1620605 | - | 1767 | WP_010959235.1 | single-stranded DNA-binding protein | - |
| SERP_RS07980 () | 1620608..1621720 | - | 1113 | WP_002504675.1 | hypothetical protein | - |
| SERP_RS07985 () | 1621737..1623269 | - | 1533 | WP_002504676.1 | replicative DNA helicase | - |
| SERP_RS07990 () | 1623291..1623809 | - | 519 | WP_002504677.1 | hypothetical protein | - |
| SERP_RS07995 () | 1623886..1624854 | - | 969 | WP_002504678.1 | ATP-binding protein | - |
| SERP_RS08000 () | 1624978..1625937 | - | 960 | WP_000852323.1 | hypothetical protein | - |
| SERP_RS08005 () | 1625981..1626661 | - | 681 | WP_000668931.1 | hypothetical protein | - |
| SERP_RS08010 () | 1626679..1627167 | - | 489 | WP_002504679.1 | hypothetical protein | - |
| SERP_RS08015 () | 1627183..1627431 | - | 249 | WP_002504680.1 | hypothetical protein | - |
| SERP_RS08020 () | 1627591..1628595 | - | 1005 | WP_002504681.1 | hypothetical protein | - |
| SERP_RS08025 () | 1628607..1629887 | - | 1281 | WP_002504682.1 | hypothetical protein | - |
| SERP_RS08030 () | 1630198..1631241 | - | 1044 | WP_002504683.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| SERP_RS08035 () | 1631925..1632353 | - | 429 | WP_002504685.1 | hypothetical protein | - |
| SERP_RS08040 () | 1632431..1632952 | - | 522 | WP_010959238.1 | hypothetical protein | - |
| SERP_RS08045 () | 1632952..1633404 | - | 453 | WP_010959239.1 | hypothetical protein | - |
| SERP_RS08050 () | 1633520..1634200 | - | 681 | WP_010959240.1 | hypothetical protein | - |
| SERP_RS08055 () | 1634229..1634492 | - | 264 | WP_002504623.1 | hypothetical protein | - |
| SERP_RS08060 () | 1634585..1634908 | - | 324 | WP_002504624.1 | hypothetical protein | - |
| SERP_RS08065 () | 1634953..1635612 | - | 660 | WP_002504625.1 | antirestriction protein ArdA | - |
| SERP_RS08070 () | 1635765..1636154 | - | 390 | WP_010959241.1 | hypothetical protein | - |
| SERP_RS08075 () | 1636291..1636551 | - | 261 | WP_010959242.1 | hypothetical protein | - |
| SERP_RS08080 () | 1636626..1636841 | - | 216 | WP_002504552.1 | hypothetical protein | - |
| SERP_RS08085 () | 1637021..1637305 | - | 285 | WP_002504554.1 | hypothetical protein | - |
| SERP_RS08095 () | 1641200..1642075 | - | 876 | WP_002504834.1 | hypothetical protein | - |
| SERP_RS08100 () | 1642111..1644396 | - | 2286 | WP_000409961.1 | ATP-dependent RecD-like DNA helicase | - |
| SERP_RS08105 () | 1644532..1646028 | + | 1497 | WP_002504833.1 | hypothetical protein | - |
| SERP_RS08110 () | 1646288..1646617 | + | 330 | WP_002504832.1 | HU family DNA-binding protein | - |
| SERP_RS08115 () | 1646643..1646828 | + | 186 | WP_000057341.1 | YonK family protein | - |
| SERP_RS08120 () | 1646837..1648021 | + | 1185 | WP_002504831.1 | hypothetical protein | - |
| SERP_RS08125 () | 1649716..1650600 | + | 885 | WP_001007716.1 | hypothetical protein | - |
| SERP_RS08130 () | 1650593..1652392 | + | 1800 | WP_002504830.1 | terminase family protein | - |
| SERP_RS08135 () | 1652410..1653972 | + | 1563 | WP_000389594.1 | hypothetical protein | - |
| SERP_RS08140 () | 1653965..1655344 | + | 1380 | WP_002504829.1 | hypothetical protein | - |
| SERP_RS08145 () | 1655372..1655812 | + | 441 | WP_002504828.1 | hypothetical protein | - |
| SERP_RS08150 () | 1655851..1656852 | + | 1002 | WP_002504827.1 | hypothetical protein | - |
| SERP_RS08155 () | 1656927..1657478 | + | 552 | WP_000985467.1 | hypothetical protein | - |
| SERP_RS08160 () | 1657496..1657930 | + | 435 | WP_000134539.1 | hypothetical protein | - |
| SERP_RS08165 () | 1657920..1658237 | + | 318 | WP_001086334.1 | hypothetical protein | - |
| SERP_RS08170 () | 1658241..1658906 | + | 666 | WP_000384369.1 | hypothetical protein | - |
| SERP_RS08175 () | 1658896..1659417 | + | 522 | WP_001177112.1 | hypothetical protein | - |
| SERP_RS08180 () | 1659423..1660295 | + | 873 | WP_000391855.1 | hypothetical protein | - |
| SERP_RS08185 () | 1660334..1661125 | + | 792 | WP_002504825.1 | hypothetical protein | - |
| SERP_RS08190 () | 1661209..1661766 | + | 558 | WP_000700062.1 | hypothetical protein | - |
| SERP_RS08195 () | 1661766..1662239 | + | 474 | WP_002504823.1 | hypothetical protein | - |
| SERP_RS08200 () | 1662255..1663271 | + | 1017 | WP_010959245.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| SERP_RS08205 () | 1663368..1671641 | + | 8274 | WP_010959246.1 | phage tail tape measure protein | - |
| SERP_RS08210 () | 1671663..1673744 | + | 2082 | WP_010959247.1 | hypothetical protein | - |
| SERP_RS08215 () | 1673805..1681850 | + | 8046 | WP_002504819.1 | hypothetical protein | - |
| SERP_RS08220 () | 1681853..1682227 | + | 375 | WP_002504818.1 | hypothetical protein | - |
| SERP_RS14015 () | 1682220..1682387 | + | 168 | WP_002504817.1 | hypothetical protein | - |
| SERP_RS08225 () | 1682429..1685098 | + | 2670 | WP_002504816.1 | tail fiber domain-containing protein | - |
| SERP_RS08230 () | 1685205..1685606 | + | 402 | WP_002504815.1 | hypothetical protein | - |
| SERP_RS08235 () | 1685588..1686100 | + | 513 | WP_002504814.1 | hypothetical protein | - |
| SERP_RS08240 () | 1686122..1686451 | + | 330 | WP_002504813.1 | phage holin | - |
| SERP_RS08245 () | 1686503..1688896 | + | 2394 | WP_002504812.1 | SGNH/GDSL hydrolase family protein | - |
| SERP_RS08250 () | 1688973..1690475 | + | 1503 | WP_002504811.1 | N-acetylmuramoyl-L-alanine amidase | - |
| SERP_RS08255 () | 1690551..1690751 | - | 201 | WP_002504810.1 | hypothetical protein | - |
| SERP_RS14020 () | 1691131..1691307 | - | 177 | WP_002504809.1 | hypothetical protein | - |
| SERP_RS08260 () | 1691446..1693092 | - | 1647 | WP_002504808.1 | hypothetical protein | - |
| SERP_RS08265 () | 1693235..1693840 | - | 606 | WP_002504807.1 | LPXTG cell wall anchor domain-containing protein | - |
| SERP_RS08270 () | 1694158..1694457 | - | 300 | Protein_1572 | YeeE/YedE family protein | - |
| SERP_RS08275 () | 1694543..1694824 | - | 282 | WP_002440364.1 | hypothetical protein | - |
| SERP_RS08280 () | 1694970..1695605 | - | 636 | WP_002457061.1 | redox-sensing transcriptional repressor Rex | - |
| SERP_RS08285 () | 1695953..1697887 | + | 1935 | WP_010959251.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Staphylococcus epidermidis isolate BPH0662 | Prophage | TA10179 | NZ_LT571449 | 1774530..1906238 | 0.002 |