MGE detailed information
MGE type: Prophage MGE length: 66038 bp
Accession: NC_002488 Location: 650674..716711 Organism: Xylella fastidiosa 9a5c Replicon: chromosome
Accession: NC_002488 Location: 650674..716711 Organism: Xylella fastidiosa 9a5c Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XF_RS02810 (XF0675) | 646650..647702 | + | 1053 | WP_010893199.1 | endolytic transglycosylase MltG | - |
| XF_RS02815 (XF0676) | 647732..648691 | + | 960 | WP_010893200.1 | DNA polymerase III subunit delta' | - |
| XF_RS02820 (XF0677) | 648691..649044 | + | 354 | WP_004083467.1 | PilZ domain-containing protein | - |
| XF_RS12905 | 649232..649759 | - | 528 | Protein_554 | site-specific integrase | - |
| XF_RS02830 | 650131..650454 | - | 324 | WP_042463587.1 | helix-turn-helix domain-containing protein | - |
| XF_RS02835 (XF0679) | 650441..650677 | - | 237 | WP_010893203.1 | hypothetical protein | - |
| XF_RS02840 (XF0680) | 650674..652092 | - | 1419 | WP_010893204.1 | DEAD/DEAH box helicase | - |
| XF_RS02845 | 652156..652584 | + | 429 | WP_042462867.1 | hypothetical protein | - |
| XF_RS02850 (XF0682) | 652586..652864 | - | 279 | WP_010893206.1 | VRR-NUC domain-containing protein | - |
| XF_RS02855 (XF0683) | 652861..655041 | - | 2181 | WP_010893207.1 | DNA polymerase | - |
| XF_RS02860 (XF0684) | 655043..656554 | - | 1512 | WP_010893208.1 | hypothetical protein | - |
| XF_RS02865 (XF0685) | 656627..657193 | - | 567 | WP_010893209.1 | DUF2815 family protein | - |
| XF_RS02870 (XF0686) | 657193..658470 | - | 1278 | WP_010893210.1 | DUF2800 domain-containing protein | - |
| XF_RS14005 | 658467..658964 | - | 498 | WP_155114982.1 | hypothetical protein | - |
| XF_RS02880 (XF0688) | 658964..659155 | - | 192 | WP_010893212.1 | hypothetical protein | - |
| XF_RS02885 (XF0689) | 659152..659424 | - | 273 | WP_010893213.1 | hypothetical protein | - |
| XF_RS02890 (XF0690) | 659456..659650 | - | 195 | WP_010893214.1 | hypothetical protein | - |
| XF_RS02895 (XF0691) | 659647..660048 | - | 402 | WP_010893215.1 | hypothetical protein | - |
| XF_RS02900 (XF0692) | 660048..660437 | - | 390 | WP_010893216.1 | hypothetical protein | - |
| XF_RS02905 (XF0693) | 660434..660991 | - | 558 | WP_010893217.1 | hypothetical protein | - |
| XF_RS14010 (XF0695) | 661338..661541 | + | 204 | WP_155114983.1 | hypothetical protein | - |
| XF_RS02915 (XF0696) | 661716..662453 | - | 738 | WP_155114984.1 | helix-turn-helix transcriptional regulator | - |
| XF_RS02920 (XF0697) | 662446..662670 | + | 225 | WP_010893221.1 | hypothetical protein | - |
| XF_RS14345 (XF0698) | 662844..663065 | - | 222 | WP_010893222.1 | hypothetical protein | - |
| XF_RS02930 | 663047..663334 | - | 288 | WP_042462876.1 | hypothetical protein | - |
| XF_RS14015 | 663376..663681 | - | 306 | WP_023907741.1 | hypothetical protein | - |
| XF_RS02940 (XF0701) | 663809..663997 | + | 189 | WP_042462880.1 | hypothetical protein | - |
| XF_RS02945 (XF0702) | 663994..664242 | + | 249 | WP_010893226.1 | hypothetical protein | - |
| XF_RS14630 | 664312..664542 | - | 231 | Protein_579 | hypothetical protein | - |
| XF_RS02955 (XF0704) | 664858..665490 | + | 633 | WP_010893228.1 | Bro-N domain-containing protein | - |
| XF_RS02960 (XF0705) | 665627..668161 | + | 2535 | WP_042462886.1 | DNA primase | - |
| XF_RS02965 (XF0706) | 668704..668901 | + | 198 | WP_010893230.1 | hypothetical protein | - |
| XF_RS02970 | 669094..669711 | + | 618 | WP_042463593.1 | hypothetical protein | - |
| XF_RS02975 (XF0707) | 669678..670172 | + | 495 | WP_010893231.1 | lysozyme | - |
| XF_RS02980 (XF0708) | 670165..670494 | + | 330 | WP_031338054.1 | phage holin family protein | - |
| XF_RS02985 (XF0709) | 670484..670945 | + | 462 | WP_042462889.1 | hypothetical protein | - |
| XF_RS02990 | 670947..671171 | + | 225 | WP_042462892.1 | hypothetical protein | - |
| XF_RS02995 (XF0710) | 671302..671883 | + | 582 | WP_010893234.1 | terminase small subunit | - |
| XF_RS03000 (XF0711) | 671876..673828 | + | 1953 | WP_042462898.1 | phage terminase large subunit family protein | - |
| XF_RS03005 (XF0712) | 673832..674380 | + | 549 | WP_010893236.1 | hypothetical protein | - |
| XF_RS03010 (XF0713) | 674377..675975 | + | 1599 | WP_010893237.1 | phage portal protein | - |
| XF_RS03015 (XF0714) | 675959..677839 | + | 1881 | WP_010893238.1 | phage major capsid protein | - |
| XF_RS03020 (XF0715) | 677857..678117 | + | 261 | WP_010893239.1 | hypothetical protein | - |
| XF_RS03025 (XF0716) | 678117..678440 | + | 324 | WP_042462902.1 | hypothetical protein | - |
| XF_RS03030 (XF0717) | 678437..678958 | + | 522 | WP_010893241.1 | hypothetical protein | - |
| XF_RS03035 (XF0718) | 678934..679476 | + | 543 | WP_042462905.1 | hypothetical protein | - |
| XF_RS03040 (XF0719) | 679473..680060 | + | 588 | WP_010893243.1 | phage baseplate assembly protein V | - |
| XF_RS03045 (XF0720) | 680065..680340 | - | 276 | WP_010893244.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| XF_RS03050 (XF0721) | 680351..680632 | - | 282 | WP_042463596.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| XF_RS03055 (XF0723) | 680840..681178 | + | 339 | WP_042462908.1 | GPW/gp25 family protein | - |
| XF_RS03060 (XF0724) | 681178..682071 | + | 894 | WP_010893248.1 | baseplate J/gp47 family protein | - |
| XF_RS03065 (XF0725) | 682064..682621 | + | 558 | WP_010893249.1 | phage tail protein I | - |
| XF_RS03070 (XF0726) | 682629..684220 | + | 1592 | Protein_603 | tail fiber domain-containing protein | - |
| XF_RS03075 (XF0727) | 684285..685463 | + | 1179 | WP_042462912.1 | phage tail sheath family protein | - |
| XF_RS03080 (XF0728) | 685463..685972 | + | 510 | WP_010893252.1 | phage major tail tube protein | - |
| XF_RS03085 (XF0729) | 685975..686262 | + | 288 | WP_010893253.1 | phage tail assembly protein | - |
| XF_RS03090 (XF0730) | 686389..688608 | + | 2220 | WP_010893254.1 | phage tail tape measure protein | - |
| XF_RS03095 (XF0731) | 688605..689087 | + | 483 | WP_010893255.1 | phage tail protein | - |
| XF_RS03100 (XF0732) | 689084..689302 | + | 219 | WP_010893256.1 | tail protein X | - |
| XF_RS03105 (XF0733) | 689293..690375 | + | 1083 | WP_010893257.1 | phage late control D family protein | - |
| XF_RS03120 (XF0736) | 691467..693374 | + | 1908 | WP_010893260.1 | threonine--tRNA ligase | - |
| XF_RS03125 (XF0737) | 693442..693969 | + | 528 | WP_075584689.1 | translation initiation factor IF-3 | - |
| XF_RS03130 (XF0739) | 694230..694427 | + | 198 | WP_004090402.1 | 50S ribosomal protein L35 | - |
| XF_RS03135 (XF0740) | 694438..694797 | + | 360 | WP_010893263.1 | 50S ribosomal protein L20 | - |
| XF_RS03140 (XF0741) | 695069..696070 | + | 1002 | WP_010893264.1 | phenylalanine--tRNA ligase subunit alpha | - |
| XF_RS03145 (XF0742) | 696154..698532 | + | 2379 | WP_010893265.1 | phenylalanine--tRNA ligase subunit beta | - |
| XF_RS03150 (XF0743) | 698556..698855 | + | 300 | WP_010893266.1 | integration host factor subunit alpha | - |
| XF_RS03155 (XF0744) | 698836..699192 | + | 357 | WP_031337099.1 | MerR family transcriptional regulator | - |
| XF_RS03165 (XF0748) | 700887..701942 | + | 1056 | WP_010893271.1 | 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM | - |
| XF_RS03170 (XF0749) | 702728..703132 | - | 405 | WP_010893272.1 | H-NS histone family protein | - |
| XF_RS03175 (XF0751) | 703411..704499 | - | 1089 | WP_010893274.1 | ribonuclease D | - |
| XF_RS03180 (XF0752) | 704622..706424 | + | 1803 | WP_038200859.1 | Hercynine oxygenase | VF |
| XF_RS03185 (XF0754) | 706550..707407 | + | 858 | WP_010893277.1 | virulence factor family protein | - |
| XF_RS03190 (XF0755) | 707473..708807 | - | 1335 | WP_010893278.1 | exodeoxyribonuclease VII large subunit | - |
| XF_RS03195 (XF0757) | 709257..710747 | + | 1491 | WP_010893280.1 | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | - |
| XF_RS03200 (XF0758) | 710744..711232 | + | 489 | WP_010893281.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| XF_RS03205 (XF0759) | 711291..712910 | + | 1620 | WP_010893282.1 | N-acetylmuramoyl-L-alanine amidase | - |
| XF_RS03210 (XF0760) | 713046..714905 | + | 1860 | WP_010893283.1 | DNA mismatch repair endonuclease MutL | - |
| XF_RS03215 (XF0761) | 714905..715867 | + | 963 | WP_023906990.1 | DUF1684 domain-containing protein | - |
| XF_RS03220 (XF0762) | 716136..716711 | - | 576 | WP_010893285.1 | dCTP deaminase | - |
| XF_RS03225 (XF0764) | 717284..718069 | - | 786 | WP_031338049.1 | sulfite exporter TauE/SafE family protein | - |
| XF_RS03230 (XF0765) | 718066..718506 | - | 441 | WP_010893288.1 | YeeE/YedE family protein | - |
| XF_RS03235 (XF0766) | 718503..718910 | - | 408 | WP_010893289.1 | YeeE/YedE family protein | - |
| XF_RS03240 (XF0767) | 718907..719251 | - | 345 | WP_010893290.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| XF_RS03245 (XF0768) | 719245..720540 | - | 1296 | WP_010893291.1 | TIGR01244 family phosphatase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xylella fastidiosa strain U24d | Prophage | TA49812 | NZ_CP009790 | 650664..716701 | 0 |