MGE detailed information
MGE type: Prophage MGE length: 43100 bp
Accession: NC_002488 Location: 2361169..2404268 Organism: Xylella fastidiosa 9a5c Replicon: chromosome
Accession: NC_002488 Location: 2361169..2404268 Organism: Xylella fastidiosa 9a5c Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XF_RS10705 (XF2473) | 2356707..2357273 | - | 567 | WP_004086027.1 | elongation factor P | - |
| XF_RS10710 (XF2474) | 2357377..2358405 | + | 1029 | WP_042463778.1 | EF-P beta-lysylation protein EpmB | - |
| XF_RS10715 (XF2475) | 2358529..2359320 | - | 792 | WP_088371725.1 | RNA methyltransferase | - |
| XF_RS10720 (XF2476) | 2359411..2360238 | + | 828 | WP_010894918.1 | inositol monophosphatase | - |
| XF_RS10725 (XF2477) | 2360408..2361088 | + | 681 | WP_010894919.1 | dethiobiotin synthase | - |
| XF_RS10730 (XF2478) | 2361085..2361492 | + | 408 | WP_010894920.1 | IS91 family transposase ISAzo26 | Transposase |
| XF_RS10735 (XF2479) | 2361812..2362894 | - | 1083 | WP_010894921.1 | phage late control D family protein | - |
| XF_RS10740 (XF2480) | 2362885..2363103 | - | 219 | WP_010893256.1 | tail protein X | - |
| XF_RS10745 (XF2481) | 2363100..2363582 | - | 483 | WP_010893255.1 | phage tail protein | - |
| XF_RS10750 (XF2482) | 2363579..2365798 | - | 2220 | WP_010894922.1 | phage tail tape measure protein | - |
| XF_RS10755 (XF2483) | 2365925..2366212 | - | 288 | WP_010894923.1 | phage tail assembly protein | - |
| XF_RS10760 (XF2484) | 2366215..2366724 | - | 510 | WP_010893252.1 | phage major tail tube protein | - |
| XF_RS10765 (XF2485) | 2366724..2367902 | - | 1179 | WP_042462912.1 | phage tail sheath family protein | - |
| XF_RS10770 (XF2486) | 2367967..2369559 | - | 1593 | WP_010894924.1 | tail fiber domain-containing protein | - |
| XF_RS10775 (XF2487) | 2369567..2370124 | - | 558 | WP_010893249.1 | phage tail protein I | - |
| XF_RS10780 (XF2488) | 2370117..2371010 | - | 894 | WP_010893248.1 | baseplate J/gp47 family protein | - |
| XF_RS10785 (XF2489) | 2371010..2371348 | - | 339 | WP_042462908.1 | GPW/gp25 family protein | - |
| XF_RS10790 (XF2490) | 2371566..2371868 | + | 303 | WP_010894925.1 | type II toxin-antitoxin system MqsR family toxin | Toxin Detail |
| XF_RS10795 (XF2491) | 2371871..2372272 | + | 402 | WP_010894926.1 | type II toxin-antitoxin system MqsA family antitoxin | Antitoxin Detail |
| XF_RS10800 (XF2492) | 2372341..2372928 | - | 588 | WP_010894927.1 | phage baseplate assembly protein V | - |
| XF_RS10805 (XF2493) | 2372925..2373467 | - | 543 | WP_010894928.1 | hypothetical protein | - |
| XF_RS10810 (XF2494) | 2373443..2373964 | - | 522 | WP_010893241.1 | hypothetical protein | - |
| XF_RS10815 (XF2495) | 2373961..2374284 | - | 324 | WP_042462902.1 | hypothetical protein | - |
| XF_RS10820 (XF2496) | 2374284..2374544 | - | 261 | WP_010893239.1 | hypothetical protein | - |
| XF_RS10825 (XF2497) | 2374562..2376442 | - | 1881 | WP_010893238.1 | phage major capsid protein | - |
| XF_RS10830 (XF2498) | 2376426..2378024 | - | 1599 | WP_010893237.1 | phage portal protein | - |
| XF_RS10835 (XF2499) | 2378021..2378569 | - | 549 | WP_010893236.1 | hypothetical protein | - |
| XF_RS10840 (XF2500) | 2378573..2380525 | - | 1953 | WP_042462898.1 | phage terminase large subunit family protein | - |
| XF_RS10845 (XF2501) | 2380518..2381099 | - | 582 | WP_010893234.1 | terminase small subunit | - |
| XF_RS10850 | 2381230..2381454 | - | 225 | WP_042462892.1 | hypothetical protein | - |
| XF_RS10855 (XF2502) | 2381456..2381917 | - | 462 | WP_042462889.1 | hypothetical protein | - |
| XF_RS10860 (XF2503) | 2381907..2382236 | - | 330 | WP_031338054.1 | phage holin family protein | - |
| XF_RS10865 (XF2504) | 2382229..2382723 | - | 495 | WP_010893231.1 | lysozyme | - |
| XF_RS10870 | 2382690..2383307 | - | 618 | WP_042463593.1 | hypothetical protein | - |
| XF_RS10875 (XF2505) | 2383798..2386329 | - | 2532 | WP_042463422.1 | DNA primase | - |
| XF_RS12585 | 2386432..2387250 | - | 819 | WP_010894930.1 | Bro-N domain-containing protein | - |
| XF_RS14215 | 2387749..2387910 | + | 162 | WP_155115001.1 | hypothetical protein | - |
| XF_RS13770 | 2388038..2388283 | - | 246 | WP_023907050.1 | hypothetical protein | - |
| XF_RS10890 (XF2508) | 2388344..2388592 | - | 249 | WP_010894932.1 | hypothetical protein | - |
| XF_RS10895 (XF2509) | 2388589..2388777 | - | 189 | WP_010894933.1 | hypothetical protein | - |
| XF_RS14220 | 2388831..2389055 | - | 225 | WP_051372715.1 | hypothetical protein | - |
| XF_RS14225 | 2389157..2389462 | + | 306 | WP_023907048.1 | hypothetical protein | - |
| XF_RS14230 | 2389459..2389659 | - | 201 | WP_031338060.1 | Rha family transcriptional regulator | - |
| XF_RS10915 (XF2511) | 2389733..2390503 | + | 771 | WP_010894935.1 | helix-turn-helix transcriptional regulator | - |
| XF_RS10920 (XF2512) | 2390672..2391211 | + | 540 | WP_010894936.1 | hypothetical protein | - |
| XF_RS10925 | 2391248..2391559 | + | 312 | WP_052262873.1 | hypothetical protein | - |
| XF_RS14235 (XF2514) | 2391747..2392202 | + | 456 | WP_010894938.1 | hypothetical protein | - |
| XF_RS10930 (XF2515) | 2392308..2392697 | + | 390 | WP_010894939.1 | hypothetical protein | - |
| XF_RS13780 (XF2516) | 2392694..2393095 | + | 402 | WP_010894940.1 | hypothetical protein | - |
| XF_RS10940 | 2393155..2393637 | - | 483 | WP_042463427.1 | hypothetical protein | - |
| XF_RS10950 | 2393937..2394128 | + | 192 | WP_023907733.1 | hypothetical protein | - |
| XF_RS10955 (XF2518) | 2394152..2394343 | + | 192 | WP_010894942.1 | hypothetical protein | - |
| XF_RS10960 (XF2519) | 2394375..2394572 | + | 198 | WP_010894943.1 | hypothetical protein | - |
| XF_RS14240 | 2394624..2395067 | + | 444 | WP_042463433.1 | hypothetical protein | - |
| XF_RS10970 (XF2522) | 2395064..2396341 | + | 1278 | WP_010894945.1 | DUF2800 domain-containing protein | - |
| XF_RS10975 (XF2523) | 2396341..2396907 | + | 567 | WP_010894946.1 | DUF2815 family protein | - |
| XF_RS12595 (XF2524) | 2396976..2398490 | + | 1515 | WP_010894947.1 | hypothetical protein | - |
| XF_RS10990 (XF2525) | 2398492..2400672 | + | 2181 | WP_010894948.1 | DNA polymerase | - |
| XF_RS10995 (XF2526) | 2400669..2400947 | + | 279 | WP_010893206.1 | VRR-NUC domain-containing protein | - |
| XF_RS11000 (XF2527) | 2400949..2401344 | - | 396 | WP_010894949.1 | hypothetical protein | - |
| XF_RS11005 (XF2528) | 2401429..2402847 | + | 1419 | WP_010894950.1 | DEAD/DEAH box helicase | - |
| XF_RS14540 (XF2529) | 2402844..2403008 | + | 165 | WP_010894951.1 | hypothetical protein | - |
| XF_RS11010 | 2403001..2403249 | + | 249 | WP_023907056.1 | DUF4224 domain-containing protein | - |
| XF_RS11015 (XF2530) | 2403249..2404268 | + | 1020 | WP_010894952.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| XF_RS11020 (XF2531) | 2404589..2404867 | + | 279 | WP_010894953.1 | hypothetical protein | - |
| XF_RS11025 (XF2532) | 2405994..2406858 | + | 865 | Protein_2178 | 30S ribosomal protein S6--L-glutamate ligase | - |
| XF_RS11030 (XF2534) | 2407544..2408221 | + | 678 | WP_010894955.1 | response regulator transcription factor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xylella fastidiosa strain U24d | Prophage | TA49823 | NZ_CP009790 | 2363203..2406302 | 0 |