SecReT4

T4SS
References

T4SS ID	589
Strain	Photobacterium damselae subsp. piscicida plasmid pP91278 (NC_008613)
Replicon	plasmid pP91278 [Browse all T4SS(s) in this replicon]
Accession	NC_008613
Location	27312..55478; 100711..108734
Name	Tra_F
Function	conjugation
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	1	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	0	1

The information of T4SS components from NC_008613
Region 1: 27312..55478

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	P91278ORF_036	22397..23014 [+], 618	118601934	hypothetical protein
2	P91278ORF_037	23226..23525 [+], 300	118601935	hypothetical protein
3	P91278ORF_038	23617..24105 [-], 489	118601936	hypothetical protein
4	P91278ORF_039	24120..26312 [-], 2193	118601937	DNA topoisomerase III
5	P91278ORF_040	26312..26473 [-], 162	118601938	hypothetical protein
6	P91278ORF_041	26527..27159 [-], 633	118601939	hypothetical protein
7	P91278ORF_042	27312..30290 [+], 2979	118601940	conjugative relaxase	TraI_F
8	P91278ORF_043	30293..32152 [+], 1860	118601941	conjugative coupling factor	TraD_F
9	P91278ORF_044	32163..32747 [+], 585	118601942	hypothetical protein
10	P91278ORF_045	32704..33333 [+], 630	118601943	putative conjugation coupling factor
11	P91278ORF_046	33343..33789 [+], 447	118601944	hypothetical protein
12	P91278ORF_047	33799..34176 [+], 378	118601945	hypothetical protein
13	P91278ORF_048	34176..34838 [+], 663	118601946	hypothetical protein
14	P91278ORF_049	35162..35539 [+], 378	118601947	hypothetical protein
15	P91278ORF_050	35684..35965 [+], 282	118601948	hypothetical protein	TraL_F
16	P91278ORF_051	35962..36588 [+], 627	118601949	sex pilus assembly protein	TraE_F
17	P91278ORF_052	36572..37489 [+], 918	118601950	hypothetical protein	TraK_F
18	P91278ORF_053	37486..38802 [+], 1317	118601951	hypothetical protein	TraB_F
19	P91278ORF_054	38799..39377 [+], 579	118601952	sex pilus assembly protein	TraV_F
20	P91278ORF_055	39390..39773 [+], 384	118601953	hypothetical protein	TraA_F
21	P91278ORF_056	39962..45505 [+], 5544	118601954	hypothetical protein
22	P91278ORF_057	45654..46361 [+], 708	118601955	DsbC
23	P91278ORF_058	46358..48805 [+], 2448	118601956	hypothetical protein	TraC_F
24	P91278ORF_059	48820..49137 [+], 318	118601957	hypothetical protein
25	P91278ORF_060	49134..49664 [+], 531	118601958	TrhF
26	P91278ORF_061	49675..50892 [+], 1218	118601959	pilus assembly protein	TraW_F
27	P91278ORF_062	50889..51560 [+], 672	118601960	hypothetical protein
28	P91278ORF_063	51557..52564 [+], 1008	118601961	hypothetical protein	TraU_F
29	P91278ORF_064	52668..55478 [+], 2811	118601962	conjugal transfer mating pair stabilization protein TraN	TraN_F
30	P91278ORF_065	55517..56377 [-], 861	118601963	hypothetical protein
31	P91278ORF_066	56500..57141 [-], 642	118601964	hypothetical protein
32	P91278ORF_067	57435..57755 [+], 321	118601965	hypothetical protein
33	P91278ORF_068	57993..58244 [+], 252	118601966	hypothetical protein
34	P91278ORF_069	58464..59432 [+], 969	118601967	hypothetical protein
35	P91278ORF_070	59443..60351 [+], 909	118601968	hypothetical protein

Region 2: 100711..108734

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	P91278ORF_114	95916..96407 [+], 492	118602012	hypothetical protein
2	P91278ORF_115	96734..97609 [+], 876	118602013	DNA replication terminus site-binding protein
3	P91278ORF_116	97762..98802 [+], 1041	118602014	KfrA protein
4	P91278ORF_117	98802..99080 [+], 279	118602015	hypothetical protein
5	P91278ORF_118	99089..100600 [+], 1512	118602016	putative DNA helicase
6	P91278ORF_119	100711..101751 [+], 1041	118602017	hypothetical protein	TraF_F
7	P91278ORF_120	101753..103186 [+], 1434	118602018	putative pilus assembly protein	TraH_F
8	P91278ORF_121	103199..106813 [+], 3615	118602019	putative pilus assembly protein	TraG_F
9	P91278ORF_122	106851..107213 [-], 363	118602020	hypothetical protein
10	P91278ORF_123	107929..108201 [+], 273	118602021	Ner-like protein
11	P91278ORF_124	108201..108734 [+], 534	118602022	hypothetical protein	Orf169_F
12	P91278ORF_125	108745..109353 [+], 609	118602023	hypothetical protein
13	P91278ORF_126	109350..109901 [+], 552	118602024	putative regulator protein
14	P91278ORF_127	109961..110380 [-], 420	118602025	DNA binding protein, H-NS-like'
15	P91278ORF_128	110382..110675 [-], 294	118602026	hypothetical protein
16	P91278ORF_129	110692..111675 [-], 984	118602027	hypothetical protein
17	P91278ORF_130	112174..112713 [+], 540	118602028	hypothetical protein
18	P91278ORF_131	112718..113005 [+], 288	118602029	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Kim MJ; Hirono I; Kurokawa K; Maki T; Hawke J; Kondo H; Santos MD; Aoki T (2008). Complete DNA sequence and analysis of the transferable multiple-drug resistance plasmids (R Plasmids) from Photobacterium damselae subsp. piscicida isolates collected in Japan and the United States. Antimicrob Agents Chemother. 52(2):606-11. [PudMed:18070959]