SecReT4

T4SS
References

T4SS ID	581
Strain	Salmonella enterica plasmid pAM04528 (NC_012693)
Replicon	plasmid pAM04528 [Browse all T4SS(s) in this replicon]
Accession	NC_012693
Location	46409..60809; 81520..90637; 147086..155097
Name	Tra_F
Function	conjugation
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	1	1	2	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	0	1

The information of T4SS components from NC_012693
Region 1: 46409..60809

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	pAM04528_0061	41495..42112 [+], 618	237810158	hypothetical protein
2	pAM04528_0062	42345..42623 [+], 279	237810159	hypothetical protein
3	pAM04528_0063	42714..43202 [-], 489	237810160	hypothetical protein
4	pAM04528_0064 (topB)	43217..45409 [-], 2193	237810161	TopB
5	pAM04528_0065	45409..45642 [-], 234	237810162	hypothetical protein
6	pAM04528_0066	45624..46256 [-], 633	237810163	hypothetical protein
7	pAM04528_0067 (traI)	46409..49381 [+], 2973	237810164	TraI	TraI_F
8	pAM04528_0068 (traD)	49384..51243 [+], 1860	237810165	TraD	TraD_F
9	pAM04528_0069	51254..51838 [+], 585	237810166	hypothetical protein
10	pAM04528_0070	51795..52424 [+], 630	237810167	hypothetical protein
11	pAM04528_0071	52434..52880 [+], 447	237810168	hypothetical protein
12	pAM04528_0072	52890..53267 [+], 378	237810169	hypothetical protein
13	pAM04528_0073	53339..53929 [+], 591	237810170	hypothetical protein
14	pAM04528_0074	54253..54630 [+], 378	237810171	hypothetical protein
15	pAM04528_0075 (traL)	54775..55056 [+], 282	237810172	TraL	TraL_F
16	pAM04528_0076 (traE)	55053..55679 [+], 627	237810173	TraE	TraE_F
17	pAM04528_0077	55663..56580 [+], 918	237810174	TraK family protein	TraK_F
18	pAM04528_0078 (traB)	56577..57893 [+], 1317	237810175	TraB	TraB_F
19	pAM04528_0079 (traV)	57890..58468 [+], 579	237810176	TraV	TraV_F
20	pAM04528_0080 (traA)	58472..58864 [+], 393	237810177	TraA	TraA_F
21	pAM04528_0081 (insC3)	59149..60132 [+], 984	237810178	truncated InsC3
22	pAM04528_0082 (traC)	60102..60809 [-], 708	237810179	truncated TraC	TraC_F
23	pAM04528_0083 (dsbC1)	60806..61513 [-], 708	237810180	hypothetical protein

Region 2: 81520..90637

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	pAM04528_0095 (dsbC2)	80816..81523 [+], 708	237810192	DsbC
2	pAM04528_0096 (traC)	81520..83967 [+], 2448	237810193	TraC	TraC_F
3	pAM04528_0097	83982..84299 [+], 318	237810194	hypothetical protein
4	pAM04528_0098	84296..84826 [+], 531	237810195	TrhF
5	pAM04528_0099 (traW)	84789..86054 [+], 1266	237810196	TraW	TraW_F
6	pAM04528_0100	86051..86722 [+], 672	237810197	hypothetical protein
7	pAM04528_0101 (traU)	86719..87726 [+], 1008	237810198	TraU	TraU_F
8	pAM04528_0102 (traN)	87830..90637 [+], 2808	237810199	conjugal transfer mating pair stabilization protein TraN	TraN_F
9	pAM04528_0103	90676..91536 [-], 861	237810200	hypothetical protein
10	pAM04528_0104	91659..92300 [-], 642	237810201	hypothetical protein
11	pAM04528_0105	92514..92915 [+], 402	237810202	hypothetical protein
12	pAM04528_0106	93153..93404 [+], 252	237810203	hypothetical protein
13	pAM04528_0107	93624..94592 [+], 969	237810204	ATPase associated with various cellular activities (AAA) family protein
14	pAM04528_0108	94603..95511 [+], 909	237810205	hypothetical protein

Region 3: 147086..155097

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	pAM04528_0165	142270..142761 [+], 492	237810262	hypothetical protein
2	pAM04528_0166	143088..143963 [+], 876	237810263	DNA replication terminus site-binding protein
3	pAM04528_0167	144125..145165 [+], 1041	237810264	hypothetical protein
4	pAM04528_0168	145452..146963 [+], 1512	237810265	UvrD/REP helicase family protein
5	pAM04528_0169 (traF)	147086..148114 [+], 1029	237810266	TraF	TraF_F
6	pAM04528_0170 (traH)	148116..149549 [+], 1434	237810267	TraH	TraH_F
7	pAM04528_0171 (traG)	149562..153176 [+], 3615	237810268	TraG	TraG_F
8	pAM04528_0172	153214..153576 [-], 363	237810269	hypothetical protein
9	pAM04528_0173	154292..154564 [+], 273	237810270	hypothetical protein
10	pAM04528_0174	154564..155097 [+], 534	237810271	transglycosylase SLT domain containing protein	Orf169_F
11	pAM04528_0175	155108..155716 [+], 609	237810272	hypothetical protein
12	pAM04528_0176	155713..155997 [+], 285	237810273	hypothetical protein
13	pAM04528_0177	155982..156263 [+], 282	237810274	hypothetical protein
14	pAM04528_0178	156323..156742 [-], 420	237810275	hypothetical protein
15	pAM04528_0179	156744..157037 [-], 294	237810276	hypothetical protein
16	pAM04528_0180	157054..158037 [-], 984	237810277	StbA

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Call DR; Singer RS; Meng D; Broschat SL; Orfe LH; Anderson JM; Herndon DR; Kappmeyer LS; Daniels JB; Besser TE (2010). blaCMY-2-positive IncA/C plasmids from Escherichia coli and Salmonella enterica are a distinct component of a larger lineage of plasmids. Antimicrob Agents Chemother. 54(2):590-6. [PudMed:19949054]