SecReT4

T4SS
References

T4SS ID	578
Strain	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Replicon	plasmid pHCM1 [Browse all T4SS(s) in this replicon]
Accession	NC_003384
Location	44356..53929; 71193..84072; 190873..207765
Name	Tra_F
Function	conjugation
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	1	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	0	1

The information of T4SS components from NC_003384
Region 1: 44356..53929

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	HCM1.61c	39594..40301 [-], 708	18466478	hypothetical protein
2	HCM1.62c	40298..40498 [-], 201	18466479	hypothetical protein
3	HCM1.63c	40516..41592 [-], 1077	18466480	hypothetical protein
4	HCM1.64 (repA2)	42127..43002 [+], 876	18466481	replication initiation protein
5	HCM1.67 (trhA)	44356..44709 [+], 354	18466482	pilin precursor	TraA_F
6	HCM1.69 (trhL)	44728..45078 [+], 351	18466483	plasmid transfer protein	TraL_F
7	HCM1.70 (trhE)	45078..45875 [+], 798	18466484	pilus assembly protein	TraE_F
8	HCM1.71	45878..47110 [+], 1233	18466485	periplasmic protein	TraK_F
9	HCM1.72	47112..47552 [+], 441	18466486	hypothetical protein
10	HCM1.73 (trhB)	47542..48900 [+], 1359	18466487	plasmid transfer protein	TraB_F
11	HCM1.74	48909..49421 [+], 513	18466488	hypothetical protein
12	HCM1.75	49422..50279 [+], 858	18466489	plasmid transfer protein
13	HCM1.76 (trhV)	50289..51239 [+], 951	18466490	plasmid transfer protein	TraV_F
14	HCM1.77 (trhC)	51248..53929 [+], 2682	18466491	plasmid transfer protein	TraC_F
15	HCM1.86	56742..57995 [+], 1254	18466492	plasmid partition protein

Region 2: 71193..84072

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	HCM1.98 (trhF)	70694..71206 [+], 513	18466504	pilin maturation protein
2	HCM1.99 (trhW)	71193..72701 [+], 1509	18466505	plasmid transfer protein	TraW_F
3	HCM1.100 (trhU)	72891..73898 [+], 1008	18466506	plasmid transfer protein	TraU_F
4	HCM1.101 (trhN)	73921..77097 [+], 3177	18466507	conjugal transfer protein TraN	TraN_F
5	HCM1.102	77433..78419 [+], 987	18466508	hypothetical protein
6	HCM1.103	78416..80455 [+], 2040	18466509	DNA helicase
7	HCM1.104c	80458..80712 [-], 255	18466510	hypothetical protein
8	HCM1.106c	81234..82106 [-], 873	18466511	lipoprotein
9	HCM1.107 (trhI)	82288..84072 [+], 1785	32765047	DNA helicase	TraI_F
10	HCM1.108	84470..85345 [+], 876	18466513	hypothetical protein
11	HCM1.109	85404..85781 [+], 378	18466514	hypothetical protein
12	HCM1.110	85842..86828 [+], 987	18466515	hypothetical protein
13	HCM1.111	86888..87940 [+], 1053	18466516	hypothetical protein
14	HCM1.112	87979..88248 [+], 270	18466517	hypothetical protein

Region 3: 190873..207765

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	HCM1.253 (mucB)	186216..187475 [+], 1260	18466631	DNA-repair modulator
2	HCM1.254c	187527..188336 [-], 810	18466632	outer membrane protein
3	HCM1.255	188443..189054 [+], 612	18466633	lipoprotein
4	HCM1.256c	189113..189535 [-], 423	18466634	hypothetical protein
5	HCM1.257c	189558..189950 [-], 393	18466635	periplasmic protein
6	HCM1.258c	189976..190725 [-], 750	18466636	thiol:disulfide interchange protein
7	HCM1.259	190873..191388 [+], 516	18466637	hypothetical protein	Orf169_F
8	HCM1.261	191440..192003 [+], 564	18466638	hypothetical protein
9	HCM1.262	192297..196286 [-], 3990	18466639	hypothetical protein	TraG_F
10	HCM1.263c	196295..197710 [-], 1416	18466640	pilus assembly protein	TraH_F
11	HCM1.264c	197700..198746 [-], 1047	18466641	pilus assembly protein	TraF_F
12	HCM1.266c	199358..199870 [-], 513	18466642	hypothetical protein
13	HCM1.268c	199873..200673 [-], 801	18466643	hypothetical protein
14	HCM1.269	201431..201916 [+], 486	18466644	hypothetical protein
15	HCM1.270	201913..202635 [+], 723	18466645	hypothetical protein
16	HCM1.271	202646..205681 [+], 3036	18466646	hypothetical protein
17	HCM1.272	205783..207765 [+], 1983	32765051	hypothetical protein	TraD_F
18	HCM1.273	207762..208868 [+], 1107	18466648	hypothetical protein
19	HCM1.275	208855..209517 [+], 663	18466649	hypothetical protein
20	HCM1.276	209530..210711 [+], 1182	18466650	peptidase
21	HCM1.277	210728..211441 [+], 714	18466651	periplasmic protein
22	HCM1.278c	211468..211824 [-], 357	18466652	hypothetical protein
23	HCM1.279c	211911..212225 [-], 315	18466653	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Parkhill J; Dougan G; James KD; Thomson NR; Pickard D; Wain J; Churcher C; Mungall KL; Bentley SD; Holden MT; Sebaihia M; Baker S; Basham D; Brooks K; Chillingworth T; Connerton P; Cronin A; Davis P; Davies RM; Dowd L; White N; Farrar J; Feltwell T; Hamlin N; Haque A; Hien TT; Holroyd S; Jagels K; Krogh A; Larsen TS; Leather S; Moule S; O'Gaora P; Parry C; Quail M; Rutherford K; Simmonds M; Skelton J; Stevens K; Whitehead S; Barrell BG (2001). Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature. 413(6858):848-52. [PudMed:11677608]