SecReT4
T4SS ID570
StrainEscherichia coli O111:H- str. 11128
Repliconplasmid pO111_1 [Browse all T4SS(s) in this replicon]
AccessionNC_013365
Location2230..11803; 29582..45087; 136313..154519
NameTra_F
FunctionNA
ClassificationType IVA; Type F
insolico This T4SS is identified in this study.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number110101110
ComponentTraY_FTrbC_FOrf169_F
Number001

The information of T4SS components from NC_013365
Region 1: 2230..11803
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1ECO111_p1-0011..876 [+], 876260752013replication initiation protein RepA 
2ECO111_p1-0021130..1711 [-], 582260752014hypothetical protein 
3ECO111_p1-0032230..2583 [+], 354260752015putative pilin precursor  TraA_F
4ECO111_p1-0042635..2952 [+], 318260752016putative plasmid transfer protein  TraL_F
5ECO111_p1-0052964..3749 [+], 786260752017putative pilus assembly protein  TraE_F
6ECO111_p1-0063752..4984 [+], 1233260752018putative transfer protein  TraK_F
7ECO111_p1-0074986..5426 [+], 441260752019putative transfer protein 
8ECO111_p1-0085416..6774 [+], 1359260752020putative plasmid transfer protein  TraB_F
9ECO111_p1-0096783..7295 [+], 513260752021hypothetical protein 
10ECO111_p1-0107401..8153 [+], 753260752022putative plasmid transfer protein 
11ECO111_p1-0118163..9113 [+], 951260752023putative plasmid transfer protein  TraV_F
12ECO111_p1-0129122..11803 [+], 2682260752024putative transfer protein  TraC_F
13ECO111_p1-01313818..15071 [+], 1254260752025putative plasmid partition protein 
14ECO111_p1-01415068..16075 [+], 1008260752026putative plasmid partition protein 
15ECO111_p1-01516259..16651 [-], 393260752027hypothetical protein 
 
Region 2: 29582..45087
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1ECO111_p1-02525242..26132 [-], 891260752036putative IS629 transposase OrfB 
2ECO111_p1-02626129..26455 [-], 327260752037putative IS629 transposase OrfA 
3ECO111_p1-02829083..29595 [+], 513260752038putative conjugative transfer system signal peptidase 
4ECO111_p1-02929582..31090 [+], 1509260752039plasmid transfer protein TrhW  TraW_F
5ECO111_p1-03031340..32287 [+], 948260752040plasmid transfer protein TrhU  TraU_F
6ECO111_p1-03132310..35486 [+], 3177260752041conjugal transfer mating pair stabilization protein TraN  TraN_F
7ECO111_p1-03336452..37339 [-], 888260752042putative IS629 transposase OrfB 
8ECO111_p1-03437339..37665 [-], 327260752043putative IS629 transposase OrfA 
9ECO111_p1-03638118..40157 [+], 2040260752044putative DNA helicase 
10ECO111_p1-03740160..40414 [-], 255260752045hypothetical protein 
11ECO111_p1-03840601..40774 [-], 174260752046hypothetical protein 
12ECO111_p1-03941061..41387 [+], 327260752047putative IS629 transposase OrfA 
13ECO111_p1-04041384..42274 [+], 891260752048putative IS629 transposase OrfB 
14ECO111_p1-04243303..45087 [+], 1785260752049putative DNA helicase  TraI_F
15ECO111_p1-04345485..46360 [+], 876260752050hypothetical protein 
16ECO111_p1-04446419..46796 [+], 378260752051hypothetical protein 
17ECO111_p1-04546857..47843 [+], 987260752052hypothetical protein 
18ECO111_p1-04647903..48955 [+], 1053260752053putative ATP-binding protein 
19ECO111_p1-04748994..49263 [+], 270260752054hypothetical protein 
 
Region 3: 136313..154519
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1ECO111_p1-147131656..132915 [+], 1260260752150putative outer membrane protein 
2ECO111_p1-148132967..133776 [-], 810260752151hypothetical protein 
3ECO111_p1-149133883..134494 [+], 612260752152hypothetical protein 
4ECO111_p1-150134553..134975 [-], 423260752153hypothetical protein 
5ECO111_p1-151134998..135390 [-], 393260752154hypothetical protein 
6ECO111_p1-152135416..136165 [-], 750260752155thiol:disulfide interchange protein 
7ECO111_p1-153136313..136828 [+], 516260752156putative pilin biogenesis protein  Orf169_F
8ECO111_p1-154136880..137491 [+], 612260752157hypothetical protein 
9ECO111_p1-155137888..138214 [+], 327260752158putative IS629 transposase OrfA 
10ECO111_p1-156138211..139101 [+], 891260752159putative IS629 transposase OrfB 
11ECO111_p1-157139141..143040 [-], 3900260752160putative pilus assembly protein  TraG_F
12ECO111_p1-158143049..144464 [-], 1416260752161putative pilus assembly protein  TraH_F
13ECO111_p1-159144454..145500 [-], 1047260752162putative pilus assembly protein  TraF_F
14ECO111_p1-160146112..146624 [-], 513260752163hypothetical protein 
15ECO111_p1-161146627..147427 [-], 801260752164hypothetical protein 
16ECO111_p1-162148185..148670 [+], 486260752165hypothetical protein 
17ECO111_p1-163148667..149389 [+], 723260752166hypothetical protein 
18ECO111_p1-164149400..152435 [+], 3036260752167conjugative transfer system protein 
19ECO111_p1-165152435..154519 [+], 2085260752168conjugative coupling factor  TraD_F
20ECO111_p1-166154519..155622 [+], 1104260752169hypothetical protein 
21ECO111_p1-167155609..156271 [+], 663260752170conjugative transfer system protein 
22ECO111_p1-168156284..157465 [+], 1182260752171signal peptide peptidase 
23ECO111_p1-169157467..158195 [+], 729260752172hypothetical protein 
24ECO111_p1-170158222..158578 [-], 357260752173hypothetical protein 
25ECO111_p1-171158665..158979 [-], 315260752174hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
Identified as part of this study from NC_013365

Genomics & Bioinformatics Group in MML, SJTU