SecReT4

T4SS
References

T4SS ID	563
Strain	Orientia tsutsugamushi str. Ikeda
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_010793
Location	1506773..1531266
Name	Tra_F
Function	NA
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	0	2	1	1	1	1	2	2	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	0	0	0	1	0	1	1	0	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	1	0

The information of T4SS components from NC_010793

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	OTT_1472	1501815..1502189 [-], 375	189184379	transposase
2	OTT_1473	1502254..1502757 [+], 504	189184380	hypothetical protein
3	OTT_1474	1502780..1503001 [+], 222	189184381	hypothetical protein
4	OTT_1475	1502998..1503264 [+], 267	189184382	hypothetical protein
5	OTT_1476	1503712..1503888 [+], 177	189184383	N6 adenine-specific DNA-methyltransferase
6	OTT_1477	1504318..1504734 [+], 417	189184384	RelA/SpoT-related protein
7	OTT_1478	1505350..1506078 [+], 729	189184385	ankyrin repeat-containing protein 17
8	OTT_1479	1506132..1506587 [-], 456	189184386	conjugative transfer protein TraD
9	OTT_1480	1506773..1508752 [+], 1980	189184387	conjugative transfer protein TraA	TraI_F
10	OTT_1481	1508974..1510758 [-], 1785	189184388	hypothetical protein
11	OTT_1482	1511405..1512475 [+], 1071	189184389	conjugative transfer protein TraI
12	OTT_1483	1512460..1513488 [+], 1029	189184390	transposase
13	OTT_1484	1513498..1515252 [-], 1755	189184391	conjugative transfer protein TraD	TraD_F
14	OTT_1485	1515258..1516403 [-], 1146	189184392	TPR repeat-containing protein 01_09
15	OTT_1486	1516419..1518770 [-], 2352	189184393	conjugative transfer protein TraG	TraG_F
16	OTT_1487	1518853..1519815 [-], 963	189184394	transposase
17	OTT_1488	1519992..1520327 [-], 336	189184395	conjugative transfer protein TraG	TraG_F
18	OTT_1489	1520327..1520812 [-], 486	189184396	conjugative transfer protein TraH	TraH_F
19	OTT_1490	1521001..1521630 [-], 630	189184397	conjugative transfer protein TraH	TraH_F
20	OTT_1491	1521627..1522325 [-], 699	189184398	conjugative transfer protein TraF	TraF_F
21	OTT_1492	1522322..1522957 [-], 636	189184399	conjugative transfer protein TraN	TraN_F
22	OTT_1493	1523246..1524013 [-], 768	189184400	conjugative transfer protein TraN
23	OTT_1494	1524010..1524393 [-], 384	189184401	conjugative transfer protein TrbC	TrbC_F
24	OTT_1495	1524416..1525003 [-], 588	189184402	conjugative transfer protein TraU	TraU_F
25	OTT_1496	1525158..1526168 [+], 1011	189184403	ankyrin repeat-containing protein 06_03
26	OTT_1497	1526067..1527938 [-], 1872	189184404	conjugative transfer protein TraC	TraC_F
27	OTT_1498	1527850..1528179 [-], 330	189184405	hypothetical protein	TraV_F
28	OTT_1499	1528179..1528448 [-], 270	189184406	conjugative transfer protein TraB	TraB_F
29	OTT_1500	1528411..1529229 [-], 819	189184407	conjugative transfer protein TraB	TraB_F
30	OTT_1501	1529548..1529877 [-], 330	189184408	hypothetical protein
31	OTT_1502	1530242..1530718 [-], 477	189184409	hypothetical protein
32	OTT_1503	1530715..1531266 [-], 552	189184410	conjugative transfer protein TraE	TraE_F
33	OTT_1504	1531266..1531601 [-], 336	189184411	hypothetical protein
34	OTT_1505	1531727..1532173 [-], 447	189184412	integrase
35	OTT_1506	1532198..1532773 [-], 576	189184413	integrase
36	OTT_1507	1533355..1533837 [-], 483	189184414	transposase
37	OTT_1508	1533945..1535111 [-], 1167	189184415	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Nakayama K; Yamashita A; Kurokawa K; Morimoto T; Ogawa M; Fukuhara M; Urakami H; Ohnishi M; Uchiyama I; Ogura Y; Ooka T; Oshima K; Tamura A; Hattori M; Hayashi T (2008). The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution. DNA Res. 15(4):185-99. [PudMed:18508905]