SecReT4

T4SS
References

T4SS ID	562
Strain	Orientia tsutsugamushi str. Ikeda
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_010793
Location	1729740..1740903
Name	Tra_F
Function	NA
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	0	2	2	0	1	1	1	2	0
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	0	0	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	1	0

The information of T4SS components from NC_010793

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	OTT_1699	1724810..1725481 [-], 672	189184606	hypothetical protein
2	OTT_1700	1726048..1727247 [+], 1200	189184607	integrase
3	OTT_1701	1727368..1727703 [+], 336	189184608	hypothetical protein
4	OTT_1702	1727703..1728254 [+], 552	189184609	conjugative transfer protein TraE	TraE_F
5	OTT_1703	1728251..1728727 [+], 477	189184610	hypothetical protein
6	OTT_1704	1729092..1729421 [+], 330	189184611	hypothetical protein
7	OTT_1705	1729740..1730558 [+], 819	189184612	conjugative transfer protein TraB	TraB_F
8	OTT_1706	1730521..1730790 [+], 270	189184613	conjugative transfer protein TraB	TraB_F
9	OTT_1707	1730790..1731119 [+], 330	189184614	hypothetical protein	TraV_F
10	OTT_1708	1731100..1733112 [+], 2013	189184615	conjugative transfer protein TraC	TraC_F
11	OTT_1709	1733281..1733589 [+], 309	189184616	conjugative transfer protein TraC	TraC_F
12	OTT_1710	1733586..1734245 [+], 660	189184617	conjugative transfer protein TraW	TraW_F
13	OTT_1711	1734332..1734535 [+], 204	189184618	hypothetical protein
14	OTT_1712	1734536..1735513 [+], 978	189184619	conjugative transfer protein TraU	TraU_F
15	OTT_1713	1735536..1735919 [+], 384	189184620	conjugative transfer protein TrbC	TrbC_F
16	OTT_1714	1735916..1737607 [+], 1692	189184621	conjugative transfer protein TraN	TraN_F
17	OTT_1715	1737604..1738302 [+], 699	189184622	conjugative transfer protein TraF	TraF_F
18	OTT_1716	1738299..1738928 [+], 630	189184623	conjugative transfer protein TraH	TraH_F
19	OTT_1717	1738978..1739322 [+], 345	189184624	conjugative transfer protein TraH	TraH_F
20	OTT_1718	1739379..1739753 [+], 375	189184625	transposase
21	OTT_1719	1739740..1740246 [+], 507	189184626	transposase
22	OTT_1720	1740356..1740568 [+], 213	189184627	conjugative transfer protein TraH
23	OTT_1721	1740568..1740903 [+], 336	189184628	conjugative transfer protein TraG	TraG_F
24	OTT_1722	1741080..1742042 [+], 963	189184629	transposase

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Nakayama K; Yamashita A; Kurokawa K; Morimoto T; Ogawa M; Fukuhara M; Urakami H; Ohnishi M; Uchiyama I; Ogura Y; Ooka T; Oshima K; Tamura A; Hattori M; Hayashi T (2008). The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution. DNA Res. 15(4):185-99. [PudMed:18508905]