SecReT4

T4SS
References

T4SS ID	547
Strain	Parvularcula bermudensis HTCC2503
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_014414
Location	8800..46320
Name	Tra_F
Function	NA
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	0	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	1	0

The information of T4SS components from NC_014414

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	PB2503_00527	4218..4526 [+], 309	304319684	hypothetical protein
2	PB2503_00532	4516..5061 [+], 546	304319685	hypothetical protein
3	PB2503_00537	5154..5237 [-], 84	304319686	hypothetical protein
4	PB2503_00542	5347..5736 [+], 390	304319687	IS 426 transposase
5	PB2503_00547	5733..5939 [+], 207	304319688	hypothetical protein
6	PB2503_00552	6121..6615 [+], 495	304319689	hypothetical protein
7	PB2503_00557	6526..7182 [-], 657	304319690	hypothetical protein
8	PB2503_00562	7351..7797 [+], 447	304319691	single-stranded DNA-binding protein
9	PB2503_00567	7757..8071 [-], 315	304319692	hypothetical protein
10	PB2503_00572	8223..8504 [+], 282	304319693	hypothetical protein
11	PB2503_00577	8501..8803 [+], 303	304319694	hypothetical protein
12	PB2503_00582	8800..10839 [+], 2040	304319695	protein TraD	TraD_F
13	PB2503_00587	10839..13823 [+], 2985	304319696	TrwC protein	TraI_F
14	PB2503_00592	13899..16019 [-], 2121	304319697	ATP-dependent helicase
15	PB2503_00597	16067..17380 [-], 1314	304319698	hypothetical protein
16	PB2503_00602	17380..20154 [-], 2775	304319699	plasma membrane H+-transporting two-sector ATPase, subunit C
17	PB2503_00607	20779..22344 [+], 1566	304319700	hypothetical protein
18	PB2503_00612	22349..23203 [+], 855	304319701	hypothetical protein
19	PB2503_00617	23787..24617 [-], 831	304319702	hypothetical protein
20	PB2503_00622	24712..25878 [+], 1167	304319703	hypothetical protein
21	PB2503_00627	25875..27644 [+], 1770	304319704	hypothetical protein
22	PB2503_00632	28174..28584 [+], 411	304319705	hypothetical protein
23	PB2503_00637	28594..31512 [-], 2919	304319706	protein TraG	TraG_F
24	PB2503_00642	31524..32942 [-], 1419	304319707	protein TraH	TraH_F
25	PB2503_00647	32927..33235 [-], 309	304319708	hypothetical protein
26	PB2503_00652	33235..34020 [-], 786	304319709	hypothetical protein	TraF_F
27	PB2503_00657	33992..35809 [-], 1818	304319710	hypothetical protein	TraN_F
28	PB2503_00662	35806..36531 [-], 726	304319711	hypothetical protein	TrbC_F
29	PB2503_00667	36542..37543 [-], 1002	304319712	conjugative transfer protein TraU	TraU_F
30	PB2503_00672	37540..38157 [-], 618	304319713	hypothetical protein	TraW_F
31	PB2503_00677	38111..38620 [-], 510	304319714	hypothetical protein
32	PB2503_00682	38617..39141 [-], 525	304319715	hypothetical protein
33	PB2503_00687	39134..39448 [-], 315	304319716	hypothetical protein
34	PB2503_00692	39435..42008 [-], 2574	304319717	protein TraC	TraC_F
35	PB2503_00697	41998..42459 [-], 462	304319718	hypothetical protein	TraV_F
36	PB2503_00702	42456..43217 [-], 762	304319719	protein-disulfide isomerase
37	PB2503_00707	43444..44700 [-], 1257	304319720	conjugative transfer factor, TraB	TraB_F
38	PB2503_00712	44697..45428 [-], 732	304319721	hypothetical protein	TraK_F
39	PB2503_00717	45425..46024 [-], 600	304319722	hypothetical protein	TraE_F
40	PB2503_00722	46027..46320 [-], 294	304319723	hypothetical protein	TraL_F
41	PB2503_00727	46448..46774 [-], 327	304319724	hypothetical protein
42	PB2503_00732	46777..46878 [+], 102	304319725	hypothetical protein
43	PB2503_00737	47170..47559 [+], 390	304319726	hypothetical protein
44	PB2503_00742	47705..48094 [+], 390	304319727	hypothetical protein
45	PB2503_00747	48091..48369 [-], 279	304319728	hypothetical protein
46	PB2503_00752	48714..50117 [-], 1404	304319729	phage integrase

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Oh HM; Kang I; Vergin KL; Kang D; Rhee KH; Giovannoni SJ; Cho JC (2011). Complete genome sequence of strain HTCC2503T of Parvularcula bermudensis, the type species of the order "Parvularculales" in the class Alphaproteobacteria. J Bacteriol. 193(1):305-6. [PudMed:21037002]