SecReT4

T4SS
References

T4SS ID	536
Strain	Aliivibrio salmonicida LFI1238
Replicon	plasmid pVSAL840 [Browse all T4SS(s) in this replicon]
Accession	NC_011311
Location	111..27827
Name	Tra_F
Function	conjugation
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	1	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	1	1	1

The information of T4SS components from NC_011311

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	VSAL_RS21720	111..281 [+], 171	501543727	TraY domain-containing protein	TraY_F
2	VSAL_RS21725 (traA)	426..704 [+], 279	765017576	type IV conjugative transfer system pilin TraA
3	VSAL_RS21730 (traL)	733..1035 [+], 303	501543729	type IV conjugative transfer system protein TraL	TraL_F
4	VSAL_RS21735 (traE)	1035..1595 [+], 561	501543730	type IV conjugative transfer system protein TraE	TraE_F
5	VSAL_RS21740 (traK)	1592..2347 [+], 756	501543731	type-F conjugative transfer system secretin TraK	TraK_F
6	VSAL_RS21745	2337..3767 [+], 1431	501543732	conjugal transfer protein TraB	TraB_F
7	VSAL_RS21750 (traV)	3780..4181 [+], 402	501543733	type IV conjugative transfer system lipoprotein TraV	TraV_F
8	VSAL_RS21755 (traC)	4191..6722 [+], 2532	501543734	type IV secretion system protein TraC	TraC_F
9	VSAL_RS21760 (trbI)	6719..7066 [+], 348	501543735	type-F conjugative transfer system protein TrbI
10	VSAL_RS21765 (traW)	7063..7719 [+], 657	501543736	type-F conjugative transfer system protein TraW	TraW_F
11	VSAL_RS21770 (traU)	7732..8736 [+], 1005	501543737	conjugal transfer pilus assembly protein TraU	TraU_F
12	VSAL_RS23485	8757..9122 [+], 366	765017567	hypothetical protein
13	VSAL_RS21780 (trbC)	9119..9817 [+], 699	765017568	type-F conjugative transfer system pilin assembly protein TrbC
14	VSAL_RS21785 (traN)	9821..11539 [+], 1719	501543739	type-F conjugative transfer system mating-pair stabilization protein TraN	TraN_F
15	VSAL_RS21790 (traF)	11549..12292 [+], 744	501543740	type-F conjugative transfer system pilin assembly protein TraF	TraF_F
16	VSAL_RS21795	12330..13049 [+], 720	765017569	hypothetical protein
17	VSAL_RS21800 (trbB)	13119..13544 [+], 426	501543742	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
18	VSAL_RS21805	13541..14926 [+], 1386	501543743	conjugal transfer protein TraH	TraH_F
19	VSAL_RS21810 (traG)	14923..17718 [+], 2796	501543744	conjugal transfer mating pair stabilization protein TraG	TraG_F
20	VSAL_RS21815	17817..18314 [+], 498	501543745	hypothetical protein
21	VSAL_RS21820 (traD)	18326..20404 [+], 2079	501543746	type IV conjugative transfer system coupling protein TraD	TraD_F
22	VSAL_RS21825 (traI)	20545..26355 [+], 5811	501543747	conjugative transfer relaxase/helicase TraI	TraI_F
23	VSAL_RS21830	26399..26752 [-], 354	501543748	hypothetical protein
24	VSAL_RS21835	27390..27827 [-], 438	501543749	lytic transglycosylase domain-containing protein	Orf169_F
25	VSAL_RS21840	27861..28256 [-], 396	501543750	hypothetical protein
26	VSAL_RS21845	28293..29294 [-], 1002	501543751	DUF1738 domain-containing protein
27	VSAL_RS23600	29539..29730 [+], 192	1789760405	hypothetical protein
28	VSAL_RS21850	30133..30489 [-], 357	501543752	hypothetical protein
29	VSAL_RS21855	30649..31068 [-], 420	501543753	hypothetical protein
30	VSAL_RS21860	31361..31636 [+], 276	501543754	HU family DNA-binding protein
31	VSAL_RS21865	31792..32052 [-], 261	501543755	hypothetical protein
32	VSAL_RS21870	32178..32468 [-], 291	501543756	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Hjerde E; Lorentzen MS; Holden MT; Seeger K; Paulsen S; Bason N; Churcher C; Harris D; Norbertczak H; Quail MA; Sanders S; Thurston S; Parkhill J; Willassen NP; Thomson NR (2008). The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay. BMC Genomics. 0.802777778. [PudMed:19099551]