SecReT4

T4SS
References

T4SS ID	508
Strain	Rickettsia heilongjiangensis 054
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_015866
Location	136896..154306; 256959..257318; 390919..398814; 1131660..1134092
Name	VirB
Function	NA
Classification	Type IVA; Type P
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	0	1	1	2	0	5	0	2	2
Component	VirB10	VirB11	VirD4
Number	1	1	1

The information of T4SS components from NC_015866
Region 1: 136896..154306

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Rh054_00775	132209..132493 [-], 285	341583359	hypothetical protein
2	Rh054_00780	132699..132998 [-], 300	341583360	hypothetical protein
3	Rh054_00785	133180..133557 [-], 378	341583361	hypothetical protein
4	Rh054_00805 (rpmB)	134469..134762 [+], 294	341583362	50S ribosomal protein L28
5	Rh054_00810	134759..134995 [+], 237	341583363	50S ribosomal protein L31
6	Rh054_00815 (engB)	135374..136012 [+], 639	341583364	GTP-binding protein YsxC
7	Rh054_00820	135960..136883 [+], 924	341583365	acetylglutamate kinase
8	Rh054_00825	136896..137183 [+], 288	341583366	type IV secretion system protein VirB3	VirB3
9	Rh054_00830	137399..139816 [+], 2418	341583367	type IV secretion system ATPase VirB4	VirB4
10	Rh054_00835	139934..142936 [+], 3003	341583368	hypothetical protein	VirB6
11	Rh054_00840	142923..144938 [+], 2016	341583369	hypothetical protein	VirB6
12	Rh054_00845	144945..147845 [+], 2901	341583370	hypothetical protein	VirB6
13	Rh054_00850	148017..150692 [+], 2676	341583371	channel protein	VirB6
14	Rh054_00855	150845..154306 [+], 3462	341583372	hypothetical protein	VirB6
15	Rh054_00860	154370..154558 [+], 189	341583373	hypothetical protein
16	Rh054_00890	157104..157214 [+], 111	341583374	hypothetical protein
17	Rh054_00895	157214..157366 [+], 153	341583375	hypothetical protein
18	Rh054_00900	157410..157508 [+], 99	341583376	hypothetical protein
19	Rh054_00905 (trmD)	157560..158264 [+], 705	341583377	tRNA (guanine-N(1)-)-methyltransferase
20	Rh054_00910 (rplS)	158282..158698 [+], 417	341583378	50S ribosomal protein L19
21	Rh054_00915	158868..159104 [-], 237	341583379	hypothetical protein

Region 2: 256959..257318

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Rh054_01380	252551..252691 [+], 141	341583464	hypothetical protein
2	Rh054_01385	252829..253122 [-], 294	341583465	hypothetical protein
3	Rh054_01390	253275..253748 [+], 474	341583466	hypothetical protein
4	Rh054_01395 (holA)	253756..254730 [+], 975	341583467	DNA polymerase III subunit delta
5	Rh054_01400	254875..255414 [+], 540	341583468	ubiquinone biosynthesis protein coq7
6	Rh054_01405	255957..256088 [-], 132	341583469	hypothetical protein
7	Rh054_01410	256087..256803 [+], 717	341583470	cytochrome c oxidase subunit III
8	Rh054_01415	256959..257318 [+], 360	341583471	virB2 protein	VirB2
9	Rh054_01420	257753..258385 [-], 633	341583472	hypothetical protein
10	Rh054_01425 (dapD)	258461..259285 [+], 825	341583473	2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
11	Rh054_01430	259546..259713 [-], 168	341583474	hypothetical protein

Region 3: 390919..398814

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Rh054_02190	386726..387130 [-], 405	341583611	Toxin of toxin-antitoxin system VapC
2	Rh054_02195	387121..387408 [-], 288	341583612	Antitoxin of toxin-antitoxin (TA) system VapB
3	Rh054_02200	387599..389062 [-], 1464	341583613	putative monovalent cation/H+ antiporter subunit D
4	Rh054_02205	389207..390322 [-], 1116	341583614	putative monovalent cation/H+ antiporter subunit D
5	Rh054_02210	390505..390840 [-], 336	341583615	putative monovalent cation/H+ antiporter subunit C
6	Rh054_02215	390919..391671 [-], 753	341583616	VirB9	VirB9
7	Rh054_02220	391673..392371 [-], 699	341583617	virB8 protein	VirB8
8	Rh054_02225	392835..393014 [+], 180	341583618	hypothetical protein
9	Rh054_02230	393064..393795 [+], 732	341583619	hypothetical protein	VirB8
10	Rh054_02235	393782..394255 [+], 474	341583620	virB9b protein	VirB9
11	Rh054_02240	394437..395885 [+], 1449	341583621	virB10 protein	VirB10
12	Rh054_02245	395882..396886 [+], 1005	341583622	type IV secretion system ATPase VirB11	VirB11
13	Rh054_02250	397039..398814 [+], 1776	341583623	type IV secretion system component VirD4	VirD4
14	Rh054_02255	398816..400228 [+], 1413	341583624	exopolyphosphatase
15	Rh054_02260	400310..400942 [-], 633	341583625	hypothetical protein
16	Rh054_02265	400935..401042 [-], 108	341583626	hypothetical protein
17	Rh054_02270	401498..401599 [-], 102	341583627	hypothetical protein
18	Rh054_02275	402110..402559 [+], 450	341583628	phage portal protein
19	Rh054_02280	402501..402788 [-], 288	341583629	phage host specificity protein

Region 4: 1131660..1134092

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Rh054_06620	1127692..1129233 [+], 1542	341584367	AmpG
2	Rh054_06625	1129300..1130055 [+], 756	341584368	Sec-independent protein translocase protein TatC
3	Rh054_06630	1130033..1131310 [+], 1278	341584369	seryl-tRNA synthetase
4	Rh054_06635	1131660..1134092 [+], 2433	341584370	virB4 protein	VirB4
5	Rh054_06640	1134227..1137715 [+], 3489	341584371	hypothetical protein
6	Rh054_06645	1137720..1138625 [+], 906	341584372	tellurium resistance protein TerC

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Duan C; Tong Y; Huang Y; Wang X; Xiong X; Wen B (2011). Complete genome sequence of Rickettsia heilongjiangensis, an emerging tick-transmitted human pathogen. J Bacteriol. 193(19):5564-5. [PudMed:21914880]