SecReT4

T4SS
References

T4SS ID	504
Strain	Neorickettsia sennetsu str. Miyayama
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_007798
Location	178418..179218; 658571..664294; 758873..773636
Name	VirB
Function	NA
Classification	Type IVA; Type P
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	0	0	1	1	0	4	0	1	2
Component	VirB10	VirB11	VirD4
Number	1	1	1

The information of T4SS components from NC_007798
Region 1: 178418..179218

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	NSE_0206 (priA)	174366..176495 [+], 2130	88608231	primosomal protein N'
2	NSE_0207	176511..176684 [+], 174	88608562	hypothetical protein
3	NSE_0208	176762..177796 [+], 1035	88608465	hypothetical protein
4	NSE_0209	177802..178398 [-], 597	88608821	exopolysaccharide synthesis protein
5	NSE_0210 (virB9-1)	178418..179218 [-], 801	88608055	type IV secretion system protein VirB9	VirB9
6	NSE_0211 (virB8-1)	179202..179849 [-], 648	88607971	type IV secretion system protein VirB8
7	NSE_0212 (grpE)	179931..180494 [+], 564	88608234	co-chaperone GrpE
8	NSE_0213 (trpS)	180524..181516 [+], 993	88608758	tryptophanyl-tRNA synthetase
9	NSE_0214	181579..181785 [+], 207	88608877	50S ribosomal protein L35
10	NSE_0215 (rplT)	181799..182152 [+], 354	88608583	50S ribosomal protein L20
11	NSE_0216 (pheS)	182149..183126 [+], 978	88608710	phenylalanyl-tRNA synthetase subunit alpha
12	NSE_0217 (rpiB)	183158..183616 [+], 459	88608285	ribose 5-phosphate isomerase B

Region 2: 658571..664294

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	NSE_0734 (ppa)	654760..655278 [+], 519	88608039	inorganic pyrophosphatase
2	NSE_0735	655545..656363 [-], 819	88608691	hypothetical protein
3	NSE_0736	656369..656461 [-], 93	88608886	hypothetical protein
4	NSE_0737 (gltX-2)	656477..657706 [-], 1230	88608680	glutamyl-tRNA synthetase
5	NSE_0738	657802..658377 [-], 576	88608162	hypothetical protein
6	NSE_0739 (virD4)	658571..660496 [-], 1926	88608007	type IV secretion system component VirD4	VirD4
7	NSE_0740 (virB11)	660527..661522 [-], 996	88608308	type IV secretion system ATPase VirB11	VirB11
8	NSE_0741 (virB10)	661528..662901 [-], 1374	88608478	type IV secretion system protein VirB10	VirB10
9	NSE_0742 (virB9-2)	662908..663630 [-], 723	88608571	type IV secretion system protein VirB9	VirB9
10	NSE_0743 (virB8-2)	663617..664294 [-], 678	88608885	type IV secretion system protein VirB8	VirB8
11	NSE_0744	664338..664511 [-], 174	88608672	hypothetical protein
12	NSE_0745 (ribA)	664568..665629 [-], 1062	88608776	GTP cyclohydrolase II
13	NSE_0746	665846..666844 [+], 999	88608183	pyruvate dehydrogenase subunit beta
14	NSE_0747	667003..667134 [-], 132	88608003	hypothetical protein
15	NSE_0748	667199..667462 [+], 264	88608602	hypothetical protein
16	NSE_0749	667645..667968 [+], 324	88608397	hypothetical protein

Region 3: 758873..773636

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	NSE_0852 (purC)	754295..755017 [-], 723	88608255	phosphoribosylaminoimidazole-succinocarboxamide synthase
2	NSE_0853 (ribE-2)	755331..755933 [+], 603	88608601	riboflavin synthase subunit alpha
3	NSE_0854 (lgt)	756036..756836 [+], 801	88608475	prolipoprotein diacylglyceryl transferase
4	NSE_0855	756879..757856 [-], 978	88607965	putative cytochrome oxidase assembly protein
5	NSE_0856 (rpmH)	758080..758214 [+], 135	88608401	50S ribosomal protein L34
6	NSE_0857 (rnpA)	758205..758546 [+], 342	88608075	ribonuclease P protein component
7	NSE_0858	758552..758860 [+], 309	88608620	hypothetical protein
8	NSE_0859	758873..762322 [-], 3450	88608766	VirB6 family type IV secretion system protein	VirB6
9	NSE_0860	762252..765761 [-], 3510	88608816	VirB6 family type IV secretion system protein	VirB6
10	NSE_0861	765772..768291 [-], 2520	88607975	VirB6 family type IV secretion system protein	VirB6
11	NSE_0862 (virB6)	768308..770929 [-], 2622	88607976	type IV secretion system protein VirB6	VirB6
12	NSE_0863 (virB4-2)	770926..773337 [-], 2412	88608419	type IV secretion system ATPase VirB4	VirB4
13	NSE_0864 (virB3)	773340..773636 [-], 297	88608247	type IV secretion system protein VirB3	VirB3
14	NSE_0865	773969..775732 [-], 1764	88608377	putative ABC transporter ATP-binding protein/permease
15	NSE_0866	775861..776952 [-], 1092	88608035	patatin-like phospholipase family protein
16	NSE_0867	776970..777077 [-], 108	88608848	hypothetical protein
17	NSE_0868	777087..777188 [-], 102	88608499	hypothetical protein
18	NSE_0869	777334..778200 [+], 867	88608171	hypothetical protein
19	NSE_0870	778226..778372 [+], 147	88608402	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Dunning Hotopp JC; Lin M; Madupu R; Crabtree J; Angiuoli SV; Eisen JA; Seshadri R; Ren Q; Wu M; Utterback TR; Smith S; Lewis M; Khouri H; Zhang C; Niu H; Lin Q; Ohashi N; Zhi N; Nelson W; Brinkac LM; Dodson RJ; Rosovitz MJ; Sundaram J; Daugherty SC; Davidsen T; Durkin AS; Gwinn M; Haft DH; Selengut JD; Sullivan SA; Zafar N; Zhou L; Benahmed F; Forberger H; Halpin R; Mulligan S; Robinson J; White O; Rikihisa Y; Tettelin H (2006). Comparative genomics of emerging human ehrlichiosis agents. PLoS Genet. 2(2):e21. [PudMed:16482227]