SecReT4
T4SS ID501
StrainRickettsia felis URRWXCal2
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_007109
Location91502..109418; 491473..499447; 1142318..1142677; 1322075..1324507
NameVirB
FunctionNA
ClassificationType IVA; Type P
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number011205022
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_007109
Region 1: 91502..109418
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RF_008086878..87657 [+], 78067458472ABC transporter permease 
2RF_0081 (mkl)87660..88418 [+], 75967458473ribonucleotide ABC transporter ATP-binding protein 
3RF_008288420..88668 [+], 24967458474hypothetical protein 
4RF_0083 (rpmB)88742..89035 [+], 2946745847550S ribosomal protein L28 
5RF_0084 (rpmE)89032..89268 [+], 2376745847650S ribosomal protein L31 
6RF_0085 (engB)89980..90618 [+], 63967458477ribosome biogenesis GTP-binding protein YsxC 
7RF_0086 (argB)90566..91489 [+], 92467458478acetylglutamate kinase 
8RF_0087 (virB3)91502..91789 [+], 28867458479type IV secretion system protein VirB3  VirB3
9RF_0088 (virB4_1)91953..94370 [+], 241867458480type IV secretion system ATPase VirB4  VirB4
10RF_0089 (virB6_1)94545..97961 [+], 341767458481TrbL/VirB6 plasmid conjugative transfer protein  VirB6
11RF_0090 (virB6_2)97948..99966 [+], 201967458482TrbL/VirB6 plasmid conjugative transfer protein  VirB6
12RF_0091 (virB6_3)99973..102906 [+], 293467458483TrbL/VirB6 plasmid conjugative transfer protein  VirB6
13RF_0092 (virB6_4)103135..105807 [+], 267367458484TrbL/VirB6 plasmid conjugative transfer protein  VirB6
14RF_0093 (virB6_5)105951..109418 [+], 346867458485TrbL/VirB6 plasmid conjugative transfer protein  VirB6
15RF_0094 (vapB2)109503..109739 [+], 23767458486antitoxin of toxin-antitoxin system VapB 
16RF_0095 (vapC2)109736..110140 [+], 40567458487toxin of toxin-antitoxin system 
17RF_0096 (pta)110265..111314 [+], 105067458488phosphate acetyltransferase 
18RF_0097 (ackA)111250..112473 [+], 122467458489acetate kinase 
19RF_0098112672..112956 [+], 28567458490hypothetical protein 
20RF_0099 (trmD)113044..113748 [+], 70567458491tRNA (guanine-N(1)-)-methyltransferase 
21RF_0100 (rplS)113767..114183 [+], 4176745849250S ribosomal protein L19 
 
Region 2: 491473..499447
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RF_0456 (vapC1)487123..487527 [-], 40567458848toxin of toxin-antitoxin system VapC 
2RF_0457 (vapB1)487518..487829 [-], 31267458849antitoxin of toxin-antitoxin system VapB 
3RF_0458 (nuoL2)487874..489337 [-], 146467458850monovalent cation/H+ antiporter subunit D 
4RF_0459489437..489559 [-], 12367458851hypothetical protein 
5RF_0460 (nuoN2)489624..490910 [-], 128767458852monovalent cation/H+ antiporter subunit D 
6RF_0461 (mnhC)491050..491412 [-], 36367458853monovalent cation/H+ antiporter subunit C 
7RF_0462 (virB9_1)491473..492225 [-], 75367458854VirB9 protein  VirB9
8RF_0463 (virB8_1)492227..492925 [-], 69967458855VirB8 protein  VirB8
9RF_0464493387..493566 [+], 18067458856hypothetical protein 
10RF_0465 (virB8_2)493616..494347 [+], 73267458857VirB8 protein  VirB8
11RF_0466 (virB9_2)494334..494810 [+], 47767458858VirB9 protein precursor  VirB9
12RF_0467 (virB10)494905..496350 [+], 144667458859VirB10 protein  VirB10
13RF_0468 (virB11)496347..497351 [+], 100567458860type IV secretion system ATPase VirB11  VirB11
14RF_0469 (virD4)497672..499447 [+], 177667458861type IV secretion system protein VirB8  VirD4
15RF_0470 (gppA)499457..500869 [+], 141367458862guanosine pentaphosphate phosphohydrolase 
16RF_0471501268..502425 [+], 115867458863Phage portal protein 
17RF_0472502422..502709 [+], 28867458864hypothetical protein 
18RF_0473502901..503401 [+], 50167458865cell surface antigen-like protein Sca7 
 
Region 3: 1142318..1142677
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RF_10711139088..1139330 [-], 24367459463transposase 
2RF_10721139405..1140157 [-], 75367459464transposase 
3RF_1073 (dapD)1140508..1141332 [-], 825674594652,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 
4RF_10741141408..1142040 [+], 63367459466hypothetical protein 
5RF_1075 (trbC)1142318..1142677 [-], 36067459467VirB2 protein  VirB2
6RF_1076 (coxC)1142833..1143669 [-], 83767459468cytochrome c oxidase subunit III 
7RF_1077 (coq7)1144392..1145045 [-], 65467459469ubiquinone biosynthesis protein Coq7 
8RF_1078 (holA)1145074..1146039 [-], 96667459470DNA polymerase III subunit delta 
9RF_10791146047..1146520 [-], 47467459471hypothetical protein 
10RF_10801146632..1147054 [+], 42367459472hypothetical protein 
 
Region 4: 1322075..1324507
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RF_1247 (ampG3)1318488..1319753 [+], 126667459639AmpG protein 
2RF_1248 (tatC)1319820..1320575 [+], 75667459640Sec-independent protein translocase protein TatC 
3RF_1249 (serS)1320553..1321830 [+], 127867459641seryl-tRNA synthetase 
4RF_1250 (virB4_2)1322075..1324507 [+], 243367459642type IV secretion/conjugal transfer ATPase  VirB4
5RF_12511324896..1328396 [+], 350167459643hypothetical protein 
6RF_1252 (terC)1328532..1329305 [+], 77467459644tellurium resistance protein TerC 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Gillespie JJ; Ammerman NC; Dreher-Lesnick SM; Rahman MS; Worley MJ; Setubal JC; Sobral BS; Azad AF (2009). An anomalous type IV secretion system in Rickettsia is evolutionarily conserved. PLoS One. 4(3):e4833. [PudMed:19279686] in_silico
(2) Ogawa M; Renesto P; Azza S; Moinier D; Fourquet P; Gorvel JP; Raoult D (2007). Proteome analysis of Rickettsia felis highlights the expression profile of intracellular bacteria. Proteomics. 7(8):1232-48. [PudMed:17385819] experimental
(3) Ogata H; Renesto P; Audic S; Robert C; Blanc G; Fournier PE; Parinello H; Claverie JM; Raoult D (2005). The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite. PLoS Biol. 3(8):e248. [PudMed:15984913]
 
experimental This literature contains experimental investigation
in_silico This literature contains bioinformatics investigation

Genomics & Bioinformatics Group in MML, SJTU