T4SS ID	417
Strain	Dickeya zeae Ech1591
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_012912
Location	1696183..1708740
Name	VirB
Function	conjugation
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	1	1	0	1	1	1	1	1	1
Component	VirB10	VirB11	VirD4
Number	1	1	1

The information of T4SS components from NC_012912
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Dd1591_1471	1691841..1692863 [+], 1023	251789088	hypothetical protein
2	Dd1591_1473	1693607..1694551 [+], 945	251789089	hypothetical protein
3	Dd1591_1474	1694872..1695108 [+], 237	251789090	Post-segregation antitoxin CcdA
4	Dd1591_1475	1695111..1695425 [+], 315	251789091	CcdB protein
5	Dd1591_1476	1695443..1696174 [-], 732	251789092	putative MobC protein
6	Dd1591_1477	1696183..1698012 [-], 1830	251789093	type IV conjugative transfer system coupling protein TraD	VirD4
7	Dd1591_1478	1698683..1698985 [-], 303	251789094	putative lipoprotein
8	Dd1591_1479	1699026..1700042 [-], 1017	251789095	Sigma 54 interacting domain-containing protein	VirB11
9	Dd1591_1480	1700032..1701234 [-], 1203	251789096	conjugation TrbI family protein	VirB10
10	Dd1591_1481	1701231..1702121 [-], 891	251789097	P-type conjugative transfer protein VirB9	VirB9
11	Dd1591_1482	1702121..1702804 [-], 684	251789098	VirB8 family protein	VirB8
12	Dd1591_1483	1702797..1702937 [-], 141	251789099	putative conjugal transfer protein	VirB7
13	Dd1591_1484	1703025..1704053 [-], 1029	251789100	TrbL/VirB6 plasmid conjugal transfer protein	VirB6
14	Dd1591_1485	1704065..1704289 [-], 225	251789101	hypothetical protein
15	Dd1591_1486	1704300..1705016 [-], 717	251789102	type IV secretion system family protein	VirB5
16	Dd1591_1487	1705041..1707788 [-], 2748	251789103	CagE TrbE VirB component of type IV transporter system	VirB4
17	Dd1591_1488	1707798..1708073 [-], 276	251789104	conjugal transfer protein TrbC	VirB2
18	Dd1591_1489	1708093..1708740 [-], 648	251789105	Lytic transglycosylase catalytic	VirB1
19	Dd1591_1490	1708810..1709043 [-], 234	251789106	hypothetical protein
20	Dd1591_1491	1709363..1710400 [+], 1038	251789107	hypothetical protein
21	Dd1591_1492	1710394..1712670 [+], 2277	251789108	helicase domain-containing protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICEDzeEch1591-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]

This literature contains bioinformatics investigation