SecReT4

T4SS
References

T4SS ID	399
Strain	Rickettsia prowazekii str. Madrid E
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_000963
Location	114023..127687; 351787..359722; 983022..985454
Name	VirB
Function	NA
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	0	0	0	2	0	4	0	1	2
Component	VirB10	VirB11	VirD4
Number	1	1	1

The information of T4SS components from NC_000963
Region 1: 114023..127687

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	RP098	109367..109618 [+], 252	15603976	hypothetical protein
2	RP099 (rpmB)	111301..111594 [+], 294	15603977	50S ribosomal protein L28
3	RP100	111591..111827 [+], 237	15603978	50S ribosomal protein L31
4	RP102 (engB)	112320..112964 [+], 645	15603979	ribosome biogenesis GTP-binding protein YsxC
5	RP103	114023..116440 [+], 2418	15603980	type IV secretion system ATPase VirB4	VirB4
6	RP104	116558..119932 [+], 3375	15603981	hypothetical protein	VirB6
7	RP105	119919..121937 [+], 2019	15603982	hypothetical protein	VirB6
8	RP106	121944..124859 [+], 2916	15603983	hypothetical protein	VirB6
9	RP107	125021..127687 [+], 2667	15603984	hypothetical protein	VirB6
10	RP108	127814..131281 [+], 3468	15603985	hypothetical protein

Region 2: 351787..359722

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	RP283	348205..349665 [-], 1461	15604152	monovalent cation/H+ antiporter subunit D
2	RP284	349717..351015 [-], 1299	15604153	monovalent cation/H+ antiporter subunit D
3	RP285	351333..351773 [-], 441	15604154	monovalent cation/H+ antiporter subunit C
4	RP286	351787..352539 [-], 753	15604155	conjugal transfer protein TrbG precursor	VirB9
5	RP287	352541..353284 [-], 744	15604156	VirB8
6	RP288	353689..353868 [+], 180	15604157	hypothetical protein
7	RP289	353919..354650 [+], 732	15604158	hypothetical protein	VirB8
8	RP290	354637..355110 [+], 474	15604159	VIRB9 protein precursor (virB9)	VirB9
9	RP291	355193..356644 [+], 1452	15604160	VIRB10 protein (virB10)	VirB10
10	RP292	356641..357645 [+], 1005	15604161	type IV secretion system ATPase VirB11	VirB11
11	RP293	357947..359722 [+], 1776	15604162	type IV secretion system component VirD4	VirD4
12	RP294	359731..361143 [+], 1413	15604163	guanosine pentaphosphate phosphohydrolase
13	RP295	362863..363759 [+], 897	15604164	hypothetical protein
14	RP296	363743..364567 [+], 825	15604165	hypothetical protein

Region 3: 983022..985454

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	RP781	979316..980581 [+], 1266	15604613	muropeptide permease AmpG
2	RP782	980757..981512 [+], 756	15604614	hypothetical protein
3	RP783	981490..982767 [+], 1278	15604615	seryl-tRNA synthetase
4	RP784	983022..985454 [+], 2433	15604616	VIRB4 protein precursor (virB4)	VirB4
5	RP785	985567..989076 [+], 3510	15604617	hypothetical protein
6	RP786	989081..989974 [+], 894	15604618	tellurium resistance protein TERC (terC)
7	RP787	990030..990212 [+], 183	15604619	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Gillespie JJ; Ammerman NC; Dreher-Lesnick SM; Rahman MS; Worley MJ; Setubal JC; Sobral BS; Azad AF (2009). An anomalous type IV secretion system in Rickettsia is evolutionarily conserved. PLoS One. 4(3):e4833. [PudMed:19279686]

This literature contains bioinformatics investigation