T4SS ID	395
Strain	Dickeya dadantii Ech586
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_013592
Location	2997519..3012415
Name	VirB
Function	conjugation
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	1	1	0	1	1	1	0	1	1
Component	VirB10	VirB11	VirD4
Number	1	1	1

The information of T4SS components from NC_013592
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Dd586_2657	2992682..2993596 [+], 915	271501179	hypothetical protein
2	Dd586_2658	2993749..2993943 [+], 195	271501180	phage transcriptional regulator AlpA
3	Dd586_2659	2993958..2994542 [+], 585	271501181	hypothetical protein
4	Dd586_2660	2994532..2994735 [+], 204	271501182	TraR/DksA family transcriptional regulator
5	Dd586_2661	2994911..2995762 [-], 852	271501183	LysR family transcriptional regulator
6	Dd586_2662	2995862..2996725 [+], 864	271501184	hypothetical protein
7	Dd586_2663	2997209..2997442 [+], 234	271501185	hypothetical protein
8	Dd586_2664	2997519..2998226 [+], 708	271501186	Lytic transglycosylase catalytic	VirB1
9	Dd586_2665	2998226..2998519 [+], 294	271501187	Conjugal transfer protein TrbC	VirB2
10	Dd586_2666	2998530..3001274 [+], 2745	271501188	CagE, TrbE, VirB component of type IV transporter system	VirB4
11	Dd586_2667	3001295..3001999 [+], 705	271501189	type IV secretion system family protein	VirB5
12	Dd586_2668	3002011..3002235 [+], 225	271501190	hypothetical protein
13	Dd586_2669	3002246..3003310 [+], 1065	271501191	TrbL/VirB6 plasmid conjugal transfer protein	VirB6
14	Dd586_2670	3003394..3003531 [+], 138	271501192	hypothetical protein
15	Dd586_2671	3003524..3004207 [+], 684	271501193	VirB8 family protein	VirB8
16	Dd586_2672	3004207..3005112 [+], 906	271501194	P-type conjugative transfer protein VirB9	VirB9
17	Dd586_2673	3005132..3006373 [+], 1242	271501195	conjugation TrbI family protein	VirB10
18	Dd586_2674	3006366..3006752 [+], 387	271501196	hypothetical protein
19	Dd586_2675	3006683..3007690 [-], 1008	271501197	hypothetical protein
20	Dd586_2676	3007728..3008747 [+], 1020	271501198	P-type DNA transfer ATPase VirB11	VirB11
21	Dd586_2677	3008744..3009142 [+], 399	271501199	hypothetical protein
22	Dd586_2678	3009188..3009490 [+], 303	271501200	KikA from plasmid origin; putative exported protein
23	Dd586_2679	3009540..3009845 [+], 306	271501201	hypothetical protein
24	Dd586_2681	3010556..3012415 [+], 1860	271501202	putative MobB mobilization protein	VirD4
25	Dd586_2682	3012425..3013171 [+], 747	271501203	mobilization protein
26	Dd586_2683	3013367..3014314 [-], 948	271501204	hypothetical protein
27	Dd586_2684	3014599..3016797 [-], 2199	271501205	helicase domain-containing protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICEDdaEch586-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]

This literature contains bioinformatics investigation