T4SS ID395
StrainDickeya dadantii Ech586
Repliconchromosome [Browse all T4SS(s) in this replicon]
ClassificationType IVA; Type P
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components

The information of T4SS components from NC_013592
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Dd586_26572992682..2993596 [+], 915271501179hypothetical protein 
2Dd586_26582993749..2993943 [+], 195271501180phage transcriptional regulator AlpA 
3Dd586_26592993958..2994542 [+], 585271501181hypothetical protein 
4Dd586_26602994532..2994735 [+], 204271501182TraR/DksA family transcriptional regulator 
5Dd586_26612994911..2995762 [-], 852271501183LysR family transcriptional regulator 
6Dd586_26622995862..2996725 [+], 864271501184hypothetical protein 
7Dd586_26632997209..2997442 [+], 234271501185hypothetical protein 
8Dd586_26642997519..2998226 [+], 708271501186Lytic transglycosylase catalytic  VirB1
9Dd586_26652998226..2998519 [+], 294271501187Conjugal transfer protein TrbC  VirB2
10Dd586_26662998530..3001274 [+], 2745271501188CagE, TrbE, VirB component of type IV transporter system  VirB4
11Dd586_26673001295..3001999 [+], 705271501189type IV secretion system family protein  VirB5
12Dd586_26683002011..3002235 [+], 225271501190hypothetical protein 
13Dd586_26693002246..3003310 [+], 1065271501191TrbL/VirB6 plasmid conjugal transfer protein  VirB6
14Dd586_26703003394..3003531 [+], 138271501192hypothetical protein 
15Dd586_26713003524..3004207 [+], 684271501193VirB8 family protein  VirB8
16Dd586_26723004207..3005112 [+], 906271501194P-type conjugative transfer protein VirB9  VirB9
17Dd586_26733005132..3006373 [+], 1242271501195conjugation TrbI family protein  VirB10
18Dd586_26743006366..3006752 [+], 387271501196hypothetical protein 
19Dd586_26753006683..3007690 [-], 1008271501197hypothetical protein 
20Dd586_26763007728..3008747 [+], 1020271501198P-type DNA transfer ATPase VirB11  VirB11
21Dd586_26773008744..3009142 [+], 399271501199hypothetical protein 
22Dd586_26783009188..3009490 [+], 303271501200KikA from plasmid origin; putative exported protein 
23Dd586_26793009540..3009845 [+], 306271501201hypothetical protein 
24Dd586_26813010556..3012415 [+], 1860271501202putative MobB mobilization protein  VirD4
25Dd586_26823012425..3013171 [+], 747271501203mobilization protein 
26Dd586_26833013367..3014314 [-], 948271501204hypothetical protein 
27Dd586_26843014599..3016797 [-], 2199271501205helicase domain-containing protein 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICEDdaEch586-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673] in_silico
in_silico This literature contains bioinformatics investigation