• T4SS
• References

T4SS ID	117
Strain	Escherichia coli SE11
Replicon	plasmid pSE11-2 [Browse all T4SS(s) in this replicon]
Accession	NC_011413
Location	39151..72102
Name	Tra_F
Function	NA
Classification	Type IVA; Type F
This T4SS is identified in this study.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	1	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	1	1	0	1	1	1	1
Component	TraY_F	TrbC_F	Orf169_F
Number	1	1	1

The information of T4SS components from NC_011413
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	ECSE_P2-0044 (psiB)	34922..35356 [+], 435	209916873	plasmid SOS inhibition protein B
2	ECSE_P2-0045	35353..36072 [+], 720	209916874	plasmid SOS inhibition protein A
3	ECSE_P2-0046	36036..36383 [+], 348	209916875	hypothetical protein
4	ECSE_P2-0047	36627..36755 [-], 129	209916876	hypothetical protein
5	ECSE_P2-0048	36845..37009 [+], 165	209916877	hypothetical protein
6	ECSE_P2-0049	36990..37349 [-], 360	209916878	hypothetical protein
7	ECSE_P2-0050	37649..37945 [+], 297	209916879	hypothetical protein
8	ECSE_P2-0051	38051..38872 [+], 822	209916880	hypothetical protein
9	ECSE_P2-0052	38995..39144 [+], 150	209916881	hypothetical protein
10	ECSE_P2-0053	39151..39603 [-], 453	209916882	hypothetical protein	Orf169_F
11	ECSE_P2-0055	39916..40152 [-], 237	209916883	hypothetical protein
12	ECSE_P2-0054	40137..40511 [+], 375	209916884	conjugal transfer protein TraM	TraM_F
13	ECSE_P2-0056	41158..41406 [+], 249	209916885	hypothetical protein
14	ECSE_P2-0057	41490..41696 [+], 207	209916886	hypothetical protein	TraY_F
15	ECSE_P2-0058	41997..42368 [+], 372	209916887	putative TraA protein	TraA_F
16	ECSE_P2-0059	42387..42686 [+], 300	209916888	conjugal transfer pilus assembly protein TraL	TraL_F
17	ECSE_P2-0060	42701..43279 [+], 579	209916889	conjugal transfer pilus assembly protein TraE	TraE_F
18	ECSE_P2-0061	43254..44033 [+], 780	209916890	conjugal transfer protein TraK	TraK_F
19	ECSE_P2-0062	44026..45372 [+], 1347	209916891	conjugal transfer pilus assembly protein TraB	TraB_F
20	ECSE_P2-0063	45369..45902 [+], 534	209916892	conjugal transfer protein TraV	TraV_F
21	ECSE_P2-0064	45932..48538 [+], 2607	209916893	conjugal transfer ATP-binding protein TraC	TraC_F
22	ECSE_P2-0065	48517..48933 [+], 417	209916894	TrbI protein
23	ECSE_P2-0066	48936..49160 [+], 225	209916895	TraR protein
24	ECSE_P2-0067	49166..49774 [+], 609	209916896	TraW protein	TraW_F
25	ECSE_P2-0068	49771..50769 [+], 999	209916897	conjugal transfer pilus assembly protein TraU	TraU_F
26	ECSE_P2-0069	50766..51263 [+], 498	209916898	hypothetical protein
27	ECSE_P2-0070	51690..51998 [+], 309	209916899	conjugal transfer protein TrbD
28	ECSE_P2-0071	52166..52771 [+], 606	209916900	TrbC protein	TrbC_F
29	ECSE_P2-0072	52768..54702 [+], 1935	209916901	conjugal transfer mating pair stabilization protein TraN	TraN_F
30	ECSE_P2-0073	54716..55489 [+], 774	209916902	TraF protein	TraF_F
31	ECSE_P2-0074	55486..55779 [+], 294	209916903	hypothetical protein
32	ECSE_P2-0075	55781..56356 [+], 576	209916904	conjugal transfer protein TrbB
33	ECSE_P2-0076	56808..58214 [+], 1407	209916905	conjugal transfer pilus assembly protein TraH	TraH_F
34	ECSE_P2-0077	58214..61102 [+], 2889	209916906	conjugal transfer mating pair stabilization protein TraG	TraG_F
35	ECSE_P2-0078	61077..61766 [+], 690	209916907	hypothetical protein
36	ECSE_P2-0079	61838..62575 [+], 738	209916908	TraT protein
37	ECSE_P2-0080	62705..63397 [+], 693	209916909	hypothetical protein
38	ECSE_P2-0081	63404..63907 [+], 504	209916910	hypothetical protein
39	ECSE_P2-0082	63948..66134 [+], 2187	209916911	TraD protein	TraD_F
40	ECSE_P2-0083	66134..71350 [+], 5217	209916912	TraI protein	TraI_F
41	ECSE_P2-0084	71350..72102 [+], 753	209916913	TraX protein	TraX_F
42	ECSE_P2-0085	72176..72733 [+], 558	209916914	conjugal transfer fertility inhibition protein FinO
43	ECSE_P2-0086	72873..73085 [+], 213	209916915	hypothetical protein
44	ECSE_P2-0087	73499..74068 [+], 570	209916916	hypothetical protein
45	ECSE_P2-0088	74489..74611 [+], 123	209916917	hypothetical protein
46	ECSE_P2-0089	74781..75041 [+], 261	209916918	replication protein
47	ECSE_P2-0090	75145..75333 [+], 189	209916919	hypothetical protein
48	ECSE_P2-0091	75334..76368 [+], 1035	209916920	replication initiation protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

Identified as part of this study from NC_011413

• Introduction
• Links
• Contact

Genomics & Bioinformatics Group in MML, SJTU