Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   EL076_RS08660 Genome accession   NZ_LR134275
Coordinates   1724626..1727130 (+) Length   834 a.a.
NCBI ID   WP_126430047.1    Uniprot ID   -
Organism   Streptococcus vestibularis strain NCTC12167     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1719626..1732130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL076_RS08625 (NCTC12167_01701) - 1719922..1720755 (-) 834 WP_003093234.1 metal ABC transporter permease -
  EL076_RS08630 (NCTC12167_01702) - 1720752..1721474 (-) 723 WP_117646772.1 metal ABC transporter ATP-binding protein -
  EL076_RS08635 (NCTC12167_01703) - 1721520..1721756 (-) 237 Protein_1624 IS5/IS1182 family transposase -
  EL076_RS08640 (NCTC12167_01704) - 1721847..1722389 (-) 543 WP_048787893.1 CvpA family protein -
  EL076_RS08645 (NCTC12167_01705) - 1722386..1722703 (-) 318 WP_003096030.1 hypothetical protein -
  EL076_RS08650 (NCTC12167_01706) rnhC 1723015..1723905 (+) 891 WP_117646773.1 ribonuclease HIII -
  EL076_RS08655 (NCTC12167_01707) lepB 1723924..1724565 (+) 642 WP_003094735.1 signal peptidase I -
  EL076_RS08660 (NCTC12167_01708) recD/recD2/recDB 1724626..1727130 (+) 2505 WP_126430047.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EL076_RS08665 (NCTC12167_01709) - 1727185..1727511 (-) 327 WP_117646775.1 AzlD domain-containing protein -
  EL076_RS08670 (NCTC12167_01710) - 1727498..1728190 (-) 693 WP_117646776.1 AzlC family ABC transporter permease -
  EL076_RS08675 (NCTC12167_01711) tsaD 1728242..1729255 (-) 1014 WP_117646777.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  EL076_RS08680 (NCTC12167_01712) rimI 1729255..1729710 (-) 456 WP_117646778.1 ribosomal protein S18-alanine N-acetyltransferase -
  EL076_RS08685 (NCTC12167_01713) tsaB 1729670..1730356 (-) 687 WP_003093512.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  EL076_RS08690 (NCTC12167_01714) - 1730617..1730847 (+) 231 WP_003093927.1 DNA-dependent RNA polymerase subunit epsilon -

Sequence

Protein


Download         Length: 834 a.a.        Molecular weight: 94110.66 Da        Isoelectric Point: 4.5239

>NTDB_id=999739 EL076_RS08660 WP_126430047.1 1724626..1727130(+) (recD/recD2/recDB) [Streptococcus vestibularis strain NCTC12167]
MQEFYFSGTIERVIFENASNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGEDYTFWGQLTNHPKYGEQLQMTRYERS
KPSASGLIKYFASDNFKGIGKKTAERIVEIYGEDPIDKILEDPSKLEQISNLSKVNREAFVAKLKINYGTEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEEHPYLLVEEVQGIGFKMADQLAERLGIASDAPERLRAALIHCLLEASMEEGDTYIEA
KALLERTIILLESARQIELDPSLVANQLTNLIQEDKVQNIETKIFDNTLYFAEQGIYTHLTRIMKDQPYISAEDKIQSSL
EEVEEELGITYDKVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSDLPIILAAPTGRAARRMNEL
TKLPSATIHRHLGLNSEDDFKTLDDYLDCDLIIIDEFSMVDTWLANQLFESISDTTQLIIVGDQDQLPSVGPGQVLADLL
QIDDLPKVSLTKIFRQSEDSTIVTLASQMRKGQLPADFTEKKADRSYFEANASHIPQMVPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPKEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIAAFDFAVHNEG
ARRNTYLIQRFEQTYTQVVDKSVEKIVKNEVTDASNQTITENDIPSETLKNKDFLENIKQSQTLINTYSHPVDKSVNKAV
QTEENSRLTEENWATIDPMIGLSEDDIAAFFNNN

Nucleotide


Download         Length: 2505 bp        

>NTDB_id=999739 EL076_RS08660 WP_126430047.1 1724626..1727130(+) (recD/recD2/recDB) [Streptococcus vestibularis strain NCTC12167]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAACGCGTCATTTTTGAAAACGCTAGTAATTTTTTTCGTATCCTACTCTT
AGAAATTGACGAAACAGACAGTGATTTTGAAGACTATGAAATCATTGTTACTGGAACTATGGGGGATGTCATGGAGGGTG
AAGACTATACCTTTTGGGGTCAGCTAACCAATCATCCCAAGTATGGCGAACAACTCCAAATGACACGCTACGAACGGTCA
AAACCTTCTGCCAGCGGTCTTATCAAATATTTTGCCAGCGACAATTTTAAGGGGATTGGTAAGAAAACAGCTGAGCGTAT
TGTCGAGATTTATGGCGAAGATCCTATTGACAAGATTCTCGAGGATCCTAGCAAGTTAGAGCAGATTTCTAACCTTTCAA
AGGTCAATCGAGAAGCCTTCGTTGCAAAGTTAAAAATCAACTATGGAACCGAACAAATCTTGTCCAAACTTTCTAGCTAT
GGACTCACACCAAAGGCTGCCTCACAAATTTTCAACCAATATAAGGAAGAGTCGCTTAATCTTATTGAGGAACACCCTTA
TCTCTTGGTAGAGGAAGTTCAAGGAATCGGATTTAAAATGGCGGATCAACTGGCTGAACGTCTCGGCATTGCTAGTGATG
CTCCTGAGCGTTTACGAGCCGCCCTGATTCATTGTCTACTAGAAGCTAGTATGGAAGAGGGCGACACCTACATCGAAGCC
AAAGCCTTGCTTGAACGAACTATCATCCTTTTGGAAAGTGCTCGCCAAATTGAACTTGACCCCTCCTTGGTCGCTAACCA
ATTAACCAACCTCATCCAAGAGGATAAAGTGCAAAATATAGAGACTAAAATCTTTGATAATACCCTATATTTTGCGGAAC
AGGGCATCTATACCCACCTAACTCGTATCATGAAAGACCAACCTTACATTAGTGCAGAGGACAAAATCCAATCAAGTCTT
GAAGAGGTGGAAGAGGAGCTTGGTATTACTTATGACAAGGTTCAAAAAGATGCCATTATCAAAGCCCTACAAAGTAAGGT
CTTCATCCTGACAGGTGGTCCCGGAACAGGGAAAACCACTGTTATTAACGGCATTATTAAAACCTATGCCGACCTTCATG
GTCTAGATCTTAAAAAGTCTGATTTGCCTATTATTTTAGCAGCACCAACAGGACGGGCTGCTCGTCGGATGAACGAACTC
ACCAAACTTCCTAGTGCCACTATTCATAGGCATTTGGGCCTCAATAGCGAGGACGATTTCAAGACCTTAGATGACTATCT
CGATTGCGATTTGATTATCATCGATGAGTTCTCTATGGTTGATACTTGGTTGGCCAATCAACTCTTCGAAAGCATTTCTG
ATACTACTCAATTAATCATTGTAGGTGACCAAGATCAGCTGCCTTCCGTAGGTCCTGGCCAAGTCTTGGCTGACCTTTTG
CAGATTGATGACTTGCCTAAGGTTTCTCTAACCAAAATTTTCAGACAATCTGAGGATTCCACTATTGTTACCTTAGCTAG
CCAGATGCGCAAAGGCCAACTACCCGCTGATTTCACAGAGAAAAAGGCTGACCGATCATACTTTGAGGCTAATGCTAGCC
ATATTCCACAGATGGTCCCTAAAATTGTCTCTGCGGCTATTAAAAGTGGGATTGCTGCTCAGGATGTACAGATTCTGGCC
CCCATGTACCGAGGACAGGCTGGTATCAACAATCTCAATACCATTATGCAGGATCTACTCAATCCCAAAGAAAAGGCCAA
TCAATTTGCCTTTAATGATATTTTCTTCCGTAAGAATGACAAGATTCTCCATCTGGTCAACGATACAGAACTCAATGTCT
TCAATGGCGATATCGGAATCATCACTGACCTCATACCTGGTAAATATACTGAAAGTAAGCAGGACGAAATTTACATGTCC
TTCGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCCATGTCAATCCACAAATC
CCAAGGGAGTGAGTTCCCAGTCGTTATCCTTCCTATCACACGCCAAAGTGGACGTATGCTTCAACGTAACCTCATCTACA
CCGCTATCACTCGCGCCAAGAGTAAGCTAGTCATGTTAGGGGAAATTGCAGCTTTCGATTTTGCCGTTCACAACGAGGGT
GCTAGACGTAATACCTACCTCATACAACGATTTGAACAAACTTATACACAAGTTGTTGATAAGTCTGTCGAAAAGATTGT
TAAAAACGAGGTAACAGATGCCTCTAATCAAACAATAACAGAAAACGATATACCCTCAGAAACCCTTAAAAACAAAGACT
TCTTGGAAAATATCAAACAATCTCAAACTCTTATTAACACTTATTCACACCCTGTGGATAAGTCTGTTAACAAAGCTGTG
CAAACAGAAGAAAACAGTCGTTTAACTGAGGAAAATTGGGCAACTATCGACCCAATGATAGGTCTCAGCGAAGATGATAT
TGCAGCCTTTTTTAACAACAACTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-237)

AAA domain (AAA_30)

(331-523)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-638)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

45.515

89.568

0.408

Multiple sequence alignment