Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EL076_RS08060 Genome accession   NZ_LR134275
Coordinates   1598886..1599671 (-) Length   261 a.a.
NCBI ID   WP_003093975.1    Uniprot ID   A0ABN0CIC2
Organism   Streptococcus vestibularis strain NCTC12167     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1593886..1604671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL076_RS08035 (NCTC12167_01580) gatC 1595108..1595410 (-) 303 WP_002884769.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  EL076_RS08040 (NCTC12167_01581) - 1595550..1596047 (-) 498 Protein_1501 glycosyltransferase -
  EL076_RS08045 (NCTC12167_01582) - 1596001..1596411 (-) 411 WP_126429966.1 glycosyltransferase -
  EL076_RS08050 (NCTC12167_01583) - 1596628..1598067 (-) 1440 WP_126429968.1 6-phospho-beta-glucosidase -
  EL076_RS08055 (NCTC12167_01584) - 1598273..1598824 (-) 552 WP_003093202.1 cysteine hydrolase family protein -
  EL076_RS08060 (NCTC12167_01585) codY 1598886..1599671 (-) 786 WP_003093975.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EL076_RS08065 (NCTC12167_01586) - 1599930..1601144 (-) 1215 WP_003096246.1 pyridoxal phosphate-dependent aminotransferase -
  EL076_RS08070 (NCTC12167_01587) - 1601508..1601960 (+) 453 WP_002891687.1 universal stress protein -
  EL076_RS08075 (NCTC12167_01588) - 1602039..1602791 (-) 753 WP_126429970.1 hypothetical protein -
  EL076_RS08080 (NCTC12167_01589) pflA 1602861..1603661 (-) 801 WP_126429972.1 pyruvate formate-lyase-activating protein -
  EL076_RS08085 (NCTC12167_01590) - 1603849..1604001 (-) 153 WP_003094577.1 LPXTG cell wall anchor domain-containing protein -
  EL076_RS10430 - 1603998..1604123 (-) 126 WP_263973187.1 hypothetical protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28802.83 Da        Isoelectric Point: 4.3664

>NTDB_id=999726 EL076_RS08060 WP_003093975.1 1598886..1599671(-) (codY) [Streptococcus vestibularis strain NCTC12167]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNTDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDDDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=999726 EL076_RS08060 WP_003093975.1 1598886..1599671(-) (codY) [Streptococcus vestibularis strain NCTC12167]
ATGGCGAATTTGCTGGCTAAAACACGTAAAATTACTTCTATCTTGCAACGCTCAGTAGATAGCTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAGTTGGCAGATATTATTGATTGTAATGCTGCTATCGTAAATGGTGGTGGTGCTCTCCTTG
GTTTTGCTATGAAATACAAAACCAACACTGACCGTGTGGAAGAGTTTTTTGAAGCGAAACAACTTCCAGAGGAATACACA
CGTGGTATCAGCCGTGTTTATGATACTCAAGAAAATATCGGTATTGACAGTGACTTGACCATTTTCCCAGTGGAATCAAA
AGATGATTTTCCAGACGGTTTAACGACAATTGCACCAATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATTATTTGGC
GTAACGACCATGATTTTGTGGACGACGACCTTATCTTGGTTGAGATTGCATCTACAGTAGTTGGTTTGCAATTGTTGAAT
CTTCAAACAGAAAACTTGGAAGAAACGATTCGTAAACAAACAGCTATTAATATGGCTATTAACACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATTTTGAATGAGTTGGACGGTTTAGAAGGTCGTTTGACAGCCTCTGTTATCGCGGACCGTA
TTGGAATCACTCGTTCTGTTATTGTTAATGCTCTTCGTAAATTAGAATCAGCTGGTATTATTGAAAGTCGTTCGCTTGGT
ATGAAAGGAACTTATCTTAAAGTCCTTAACGAAGGTATCTACGACAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502