Detailed information NTG0999626

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: EL086_RS09120
• Genome accession: NZ_LR134274
• Coordinates: 1976894..1979398 (+)
• Length: 834 a.a.
• NCBI ID: WP_038676786.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain NCTC8618
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1971894..1984398

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL086_RS09100 (NCTC8618_04262)	-	1974114..1974656 (-)	543	WP_037602641.1	CvpA family protein	-
EL086_RS09105 (NCTC8618_04263)	zapA	1974653..1974967 (-)	315	WP_004183554.1	cell division protein ZapA	-
EL086_RS09110 (NCTC8618_04264)	rnhC	1975284..1976168 (+)	885	WP_126405089.1	ribonuclease HIII	-
EL086_RS09115 (NCTC8618_04265)	lepB	1976192..1976833 (+)	642	WP_002884233.1	signal peptidase I	-
EL086_RS09120 (NCTC8618_04266)	recD/recD2/recDB	1976894..1979398 (+)	2505	WP_038676786.1	ATP-dependent RecD-like DNA helicase	Machinery gene
EL086_RS09125 (NCTC8618_04267)	-	1979450..1979776 (-)	327	WP_037611255.1	AzlD domain-containing protein	-
EL086_RS09130 (NCTC8618_04268)	-	1979763..1980455 (-)	693	WP_038676788.1	AzlC family ABC transporter permease	-
EL086_RS09135 (NCTC8618_04269)	tsaD	1980507..1981520 (-)	1014	WP_038676790.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
EL086_RS09140 (NCTC8618_04270)	rimI	1981520..1981975 (-)	456	WP_038676793.1	ribosomal protein S18-alanine N-acetyltransferase	-
EL086_RS09145 (NCTC8618_04271)	tsaB	1981935..1982621 (-)	687	WP_038676795.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
EL086_RS09150 (NCTC8618_04272)	-	1982882..1983112 (+)	231	WP_022495963.1	DNA-dependent RNA polymerase subunit epsilon	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 94006.28 Da
• Isoelectric Point: 4.4583

>NTDB_id=999626 EL086_RS09120 WP_038676786.1 1976894..1979398(+) (recD/recD2/recDB) [Streptococcus salivarius strain NCTC8618]
MQEFYFSGTIERVIFENASNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGEDYTFWGQLTNHPKYGEQLQMTRYERS
KPSASGLIKYFASDNFKGIGKKTAERIVEIYGEDPIDKILEDPSKLEQIPNLSKVNREAFVAKLKINYGTEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEEHPYLLVEEVQGIGFKIADQLAERLGIASDAPERLRAALIHCLLETSMEEGDTYIEA
KALLERTIILLESARQIELDPALVAKELTNLIQEDKVQNIETKIFDNTLYFAEQGIYTHLTRIMKDQPDISAEDKIQASL
EEVEEELGITYDKVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSDLPIILAAPTGRAARRMNEL
TQLPSATIHRHLGLNSEDDFKTLEDYLDCDLIIIDEFSMVDTWLANQLFESISDSTQVIIVGDQDQLPSVGPGQVLADLL
QIDNLPKVSLTKIFRQSEDSTIVTLASQMRQGQLPADFTEKKADRSYFEANANHIPQMVPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPQEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEITAFDYAVHNEG
AKRNTYLIQRFEQTYTQAVDKSVEKIVKNEATGASNQTKTKNNDPSETLENKDFSENINPSPDLVNTYSQPVDKSVNKPV
QTEENYRLTEENWSTLDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=999626 EL086_RS09120 WP_038676786.1 1976894..1979398(+) (recD/recD2/recDB) [Streptococcus salivarius strain NCTC8618]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAACGCGTCATTTTCGAAAACGCTAGTAATTTTTTCCGTATTCTACTCTT
AGAAATTGACGAAACAGACAGTGATTTTGAGGACTATGAAATCATTGTCACAGGAACCATGGGAGATGTCATGGAAGGCG
AAGATTATACTTTCTGGGGTCAGCTAACCAATCATCCAAAATATGGTGAACAACTCCAAATGACGCGCTACGAACGGTCA
AAACCTTCTGCTAGCGGTCTTATCAAGTATTTCGCCAGCGACAATTTTAAGGGGATTGGTAAGAAAACAGCTGAGCGTAT
TGTCGAGATTTATGGTGAAGACCCTATTGACAAGATTCTCGAGGATCCGAGCAAATTAGAACAGATTCCTAATCTGTCCA
AGGTCAATCGAGAAGCCTTCGTTGCAAAGTTAAAAATCAACTATGGAACCGAACAAATCTTGTCCAAACTTTCCAGCTAT
GGACTCACACCAAAAGCTGCCTCACAAATTTTCAACCAATATAAGGAAGAATCGCTCAACCTTATCGAAGAACACCCTTA
TCTCTTGGTAGAAGAAGTTCAAGGAATCGGATTTAAAATAGCCGACCAACTAGCCGAACGCTTAGGGATTGCTAGTGATG
CTCCTGAGCGTTTACGAGCTGCCTTGATTCATTGTCTGCTAGAAACTAGCATGGAAGAAGGCGACACCTATATCGAAGCC
AAAGCCTTGCTTGAACGAACTATCATCCTTTTGGAAAGTGCTCGTCAGATTGAACTTGACCCCGCCTTAGTCGCGAAGGA
ATTAACCAATCTCATCCAAGAGGATAAAGTGCAAAATATAGAGACTAAAATCTTTGATAATACCCTATATTTTGCGGAAC
AGGGCATCTATACCCACCTAACTCGTATCATGAAAGACCAACCTGACATCAGTGCAGAGGACAAAATCCAAGCAAGTCTT
GAAGAGGTGGAAGAGGAACTTGGTATTACTTATGATAAGGTTCAAAAAGATGCCATTATCAAAGCCCTACAAAGCAAGGT
CTTCATCCTGACAGGTGGTCCCGGGACAGGTAAAACCACCGTTATTAACGGAATCATTAAAACTTATGCCGACCTTCATG
GTCTAGATCTCAAAAAGTCTGATTTGCCTATTATTTTAGCGGCACCAACAGGACGGGCTGCTCGTCGGATGAACGAACTC
ACCCAACTCCCTAGCGCCACAATCCATAGACATTTGGGCCTCAATAGCGAGGACGATTTCAAGACCTTGGAGGACTATCT
CGATTGCGACTTGATTATCATCGATGAGTTTTCTATGGTTGATACTTGGTTGGCCAATCAACTTTTTGAAAGTATCTCTG
ATTCAACCCAAGTCATCATTGTGGGTGACCAAGACCAACTGCCTTCCGTAGGCCCTGGCCAGGTCTTGGCTGACCTTTTG
CAGATTGATAACTTGCCTAAGGTTTCTCTGACCAAAATTTTCAGACAATCCGAGGATTCCACCATCGTTACTTTAGCTAG
TCAGATGCGCCAAGGCCAACTACCCGCTGATTTCACAGAGAAAAAGGCTGACCGCTCTTACTTTGAGGCCAATGCCAACC
ATATTCCACAGATGGTTCCTAAAATAGTCTCTGCCGCTATAAAGAGCGGGATAGCTGCTCAGGATGTGCAGATTCTAGCT
CCCATGTATCGAGGACAGGCTGGTATTAACAATCTCAATACCATTATGCAGGACCTACTTAATCCTCAAGAAAAGGCCAA
TCAGTTTGCCTTTAATGACATTTTCTTCCGTAAGAACGACAAGATTCTCCATCTGGTCAACGATACCGAACTCAATGTCT
TCAATGGCGACATCGGCATCATTACTGATCTCATCCCTGGTAAATATACTGAAAGCAAGCAGGACGAAATTTACATGTCC
TTTGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCCATGTCAATCCACAAATC
TCAAGGGAGTGAGTTCCCAGTCGTTATCCTTCCCATCACACGCCAAAGTGGACGTATGCTACAACGTAACCTCATCTACA
CTGCTATCACACGCGCCAAGAGTAAGCTAGTCATGTTAGGGGAAATCACAGCTTTCGATTATGCTGTTCACAACGAGGGG
GCTAAACGAAATACTTATCTCATCCAACGTTTTGAACAAACTTATACACAAGCTGTTGATAAGTCTGTCGAAAAGATTGT
TAAAAACGAGGCAACAGGCGCCTCCAATCAAACAAAAACGAAAAACAACGACCCCTCAGAAACCCTTGAAAACAAAGACT
TTTCGGAAAATATCAATCCATCCCCAGATCTTGTTAACACTTATTCACAACCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACAGAAGAAAACTATCGTTTAACTGAAGAAAATTGGTCAACTCTAGATCCAATGATTGGTCTCAGTGAAGACGATAT
TGCTGCCTTTTTTAACAATAACTAA

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• Helix-hairpin-helix containing domain (HHH_RecD2) (147-237)

• AAA domain (AAA_30) (331-523)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	45.333	89.928	0.408