Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ABD410_RS01470 Genome accession   NZ_CP155740
Coordinates   275220..276143 (+) Length   307 a.a.
NCBI ID   WP_023612424.1    Uniprot ID   A0A5S4TJJ9
Organism   Streptococcus pyogenes strain 1851/03     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 270220..281143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD410_RS01455 (ABD410_01445) amiC 271720..273222 (+) 1503 WP_011017334.1 ABC transporter permease Regulator
  ABD410_RS01460 (ABD410_01450) amiD 273222..274148 (+) 927 WP_023612408.1 oligopeptide ABC transporter permease OppC Regulator
  ABD410_RS01465 (ABD410_01455) amiE 274157..275227 (+) 1071 WP_023612409.1 ABC transporter ATP-binding protein Regulator
  ABD410_RS01470 (ABD410_01460) amiF 275220..276143 (+) 924 WP_023612424.1 ABC transporter ATP-binding protein Regulator
  ABD410_RS01475 - 276181..276270 (-) 90 WP_110002794.1 IS3 family transposase -
  ABD410_RS01480 (ABD410_01465) - 276291..276470 (-) 180 WP_023612403.1 hypothetical protein -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34741.94 Da        Isoelectric Point: 6.4036

>NTDB_id=999188 ABD410_RS01470 WP_023612424.1 275220..276143(+) (amiF) [Streptococcus pyogenes strain 1851/03]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERQKELVVYYPDQHDYTLDKPSMVEIKPNHFVWANQAEIEKYQKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=999188 ABD410_RS01470 WP_023612424.1 275220..276143(+) (amiF) [Streptococcus pyogenes strain 1851/03]
ATGTCTGAGAAATTAGTCGAAGTAAAAGACCTAGAAATTTCCTTCGGAGAAGGAAAGAAAAAATTTGTTGCAGTTAAAAA
TGCTAATTTCTTTATTAAAAAAGGAGAAACCTTTTCTTTAGTTGGAGAGTCTGGGAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAACGATACTAGTTCAGGTCAAATTTTATACGATGGGAAAGTAATTAATGGCAGAAAATCAAAATCA
GAAGCCAATGAGCTCATTCGTAAAATTCAAATGATTTTCCAAGATCCCGCTGCTAGTTTGAATGAACGGGCAACCGTTGA
CTACATCATTTCAGAAGGTCTTTATAACTTTAATCTGTTTAAAACAGAGGAAGAACGTAAAGAAAAAATTAAGAACATGA
TGGCCGAAGTTGGTTTGCTATCAGAGCATTTGACGCGCTACCCTCATGAATTTTCAGGAGGTCAACGTCAGCGAATCGGT
ATCGCTAGAGCCCTAGTAATGAACCCTGAATTCGTTATTGCTGATGAACCGATTTCAGCTTTGGACGTTTCCGTTCGCGC
ACAGGTCTTGAATCTTCTTAAAAGAATGCAAGCCGAAAAAGGTTTGACTTATCTCTTCATTGCCCATGATCTTTCAGTCG
TTCGCTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGGGTTATTGTAGAAGTTGCAGAAACAGAAGAACTGTTTAAT
AACCCAATTCATCCCTACACCCAATCTTTGTTATCAGCCGTGCCTATCCCAGATCCAATTTTAGAGCGTCAAAAAGAACT
TGTTGTCTATTATCCAGACCAGCATGATTATACATTAGATAAGCCATCAATGGTTGAAATCAAACCAAATCACTTTGTTT
GGGCAAACCAAGCAGAAATTGAAAAATATCAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4TJJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

82.353

99.674

0.821
  amiF Streptococcus thermophilus LMD-9

82.026

99.674

0.818
  amiF Streptococcus salivarius strain HSISS4

82.026

99.674

0.818

Multiple sequence alignment