Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ABD407_RS03630 Genome accession   NZ_CP155736
Coordinates   696002..696868 (+) Length   288 a.a.
NCBI ID   WP_023612376.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1966/14     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 691002..701868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD407_RS03605 (ABD407_03590) - 691193..691609 (+) 417 WP_023612283.1 sigma factor-like helix-turn-helix DNA-binding protein -
  ABD407_RS03610 (ABD407_03595) - 692270..694045 (+) 1776 WP_369324085.1 recombinase family protein -
  ABD407_RS03615 (ABD407_03600) - 694202..694438 (+) 237 WP_009881177.1 DUF1146 family protein -
  ABD407_RS03620 (ABD407_03605) murA 694503..695774 (+) 1272 WP_002990414.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ABD407_RS03625 (ABD407_03610) - 695778..695966 (+) 189 WP_011017613.1 DNA-directed RNA polymerase subunit beta -
  ABD407_RS03630 (ABD407_03615) endA 696002..696868 (+) 867 WP_023612376.1 DNA/RNA non-specific endonuclease Machinery gene
  ABD407_RS03635 (ABD407_03620) pheS 697151..698194 (+) 1044 WP_003057440.1 phenylalanine--tRNA ligase subunit alpha -
  ABD407_RS03640 (ABD407_03625) pheT 698404..700809 (+) 2406 WP_032465590.1 phenylalanine--tRNA ligase subunit beta -
  ABD407_RS03645 (ABD407_03630) - 700919..701296 (+) 378 WP_002993028.1 OsmC family protein -
  ABD407_RS03650 (ABD407_03635) - 701289..701675 (+) 387 WP_002990406.1 YbgA family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32087.59 Da        Isoelectric Point: 10.5080

>NTDB_id=998968 ABD407_RS03630 WP_023612376.1 696002..696868(+) (endA) [Streptococcus pyogenes strain 1966/14]
MLAKKKRKRVLNSFLLILLVLGSNCLAKSDFIASNHPIKQLYQTLVGEKKKSLLTHNNLPADVPTEALAASVLTPSIKKQ
LGPDVQWNGAGAYIINRNKTDLNAKVASLPYANNETKWVQEQKVPKRANALLTKSTRQYRNRYQTDNAYRNFKPAGWHRL
HHLKGSYDHAVDRGHLLGYALVGGLKGLDASTGNPDNIATQLSWANQANKPYSTGQNYYEGLVRRALDKGHRVRYRVTLL
YDGDNLLASGSHLEAKSSDGSLTFNVFVPNVQPGLTVDYRTRQIAINL

Nucleotide


Download         Length: 867 bp        

>NTDB_id=998968 ABD407_RS03630 WP_023612376.1 696002..696868(+) (endA) [Streptococcus pyogenes strain 1966/14]
ATGTTAGCAAAGAAAAAACGAAAAAGGGTGCTTAATTCCTTCTTATTGATTTTGTTAGTGTTGGGGTCTAACTGCCTTGC
TAAGAGTGATTTCATAGCTAGCAATCACCCTATCAAGCAACTTTATCAGACTCTTGTTGGGGAGAAGAAAAAATCATTAC
TCACACATAATAATTTGCCCGCTGATGTTCCCACAGAAGCTCTGGCGGCATCGGTATTAACACCATCAATCAAAAAGCAA
CTAGGTCCAGATGTTCAGTGGAATGGAGCAGGCGCCTATATTATCAACAGGAACAAAACAGATTTAAATGCTAAGGTAGC
CAGTCTGCCCTATGCCAACAATGAAACCAAATGGGTGCAAGAGCAAAAGGTTCCTAAAAGAGCTAATGCCTTACTTACTA
AGTCGACACGACAGTATCGAAATCGCTATCAAACGGACAATGCTTATCGTAACTTTAAGCCAGCAGGTTGGCACCGATTG
CACCACTTAAAAGGAAGTTATGATCACGCGGTTGATAGAGGGCATTTGCTAGGTTATGCTTTAGTTGGTGGACTGAAAGG
TTTAGATGCTTCTACCGGTAATCCTGATAATATTGCCACTCAACTAAGTTGGGCTAATCAAGCAAATAAACCCTACTCGA
CAGGTCAGAATTACTATGAAGGTTTAGTACGTCGTGCTTTAGATAAGGGGCATCGCGTCCGCTACCGTGTCACCCTACTT
TATGATGGTGATAATCTACTAGCCAGTGGTAGCCATTTGGAGGCTAAATCCTCTGATGGCAGCTTGACTTTTAACGTGTT
TGTTCCAAATGTCCAACCAGGATTGACCGTTGATTATAGGACGAGACAAATAGCTATCAATCTCTAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(111-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

58.65

82.292

0.483
  endA Streptococcus pneumoniae D39

58.65

82.292

0.483
  endA Streptococcus pneumoniae R6

58.65

82.292

0.483
  endA Streptococcus pneumoniae TIGR4

58.65

82.292

0.483

Multiple sequence alignment