Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ABD407_RS01480 Genome accession   NZ_CP155736
Coordinates   275091..276014 (+) Length   307 a.a.
NCBI ID   WP_023612424.1    Uniprot ID   A0A5S4TJJ9
Organism   Streptococcus pyogenes strain 1966/14     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 270091..281014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD407_RS01465 (ABD407_01455) amiC 271591..273093 (+) 1503 WP_011017334.1 ABC transporter permease Regulator
  ABD407_RS01470 (ABD407_01460) amiD 273093..274019 (+) 927 WP_023612408.1 oligopeptide ABC transporter permease OppC Regulator
  ABD407_RS01475 (ABD407_01465) amiE 274028..275098 (+) 1071 WP_023612409.1 ABC transporter ATP-binding protein Regulator
  ABD407_RS01480 (ABD407_01470) amiF 275091..276014 (+) 924 WP_023612424.1 ABC transporter ATP-binding protein Regulator
  ABD407_RS01485 - 276052..276141 (-) 90 WP_110002794.1 IS3 family transposase -
  ABD407_RS01490 (ABD407_01475) - 276162..276341 (-) 180 WP_023612403.1 hypothetical protein -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34741.94 Da        Isoelectric Point: 6.4036

>NTDB_id=998955 ABD407_RS01480 WP_023612424.1 275091..276014(+) (amiF) [Streptococcus pyogenes strain 1966/14]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERQKELVVYYPDQHDYTLDKPSMVEIKPNHFVWANQAEIEKYQKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=998955 ABD407_RS01480 WP_023612424.1 275091..276014(+) (amiF) [Streptococcus pyogenes strain 1966/14]
ATGTCTGAGAAATTAGTCGAAGTAAAAGACCTAGAAATTTCCTTCGGAGAAGGAAAGAAAAAATTTGTTGCAGTTAAAAA
TGCTAATTTCTTTATTAAAAAAGGAGAAACCTTTTCTTTAGTTGGAGAGTCTGGGAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAACGATACTAGTTCAGGTCAAATTTTATACGATGGGAAAGTAATTAATGGCAGAAAATCAAAATCA
GAAGCCAATGAGCTCATTCGTAAAATTCAAATGATTTTCCAAGATCCCGCTGCTAGTTTGAATGAACGGGCAACCGTTGA
CTACATCATTTCAGAAGGTCTTTATAACTTTAATCTGTTTAAAACAGAGGAAGAACGTAAAGAAAAAATTAAGAACATGA
TGGCCGAAGTTGGTTTGCTATCAGAGCATTTGACGCGCTACCCTCATGAATTTTCAGGAGGTCAACGTCAGCGAATCGGT
ATCGCTAGAGCCCTAGTAATGAACCCTGAATTCGTTATTGCTGATGAACCGATTTCAGCTTTGGACGTTTCCGTTCGCGC
ACAGGTCTTGAATCTTCTTAAAAGAATGCAAGCCGAAAAAGGTTTGACTTATCTCTTCATTGCCCATGATCTTTCAGTCG
TTCGCTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGGGTTATTGTAGAAGTTGCAGAAACAGAAGAACTGTTTAAT
AACCCAATTCATCCCTACACCCAATCTTTGTTATCAGCCGTGCCTATCCCAGATCCAATTTTAGAGCGTCAAAAAGAACT
TGTTGTCTATTATCCAGACCAGCATGATTATACATTAGATAAGCCATCAATGGTTGAAATCAAACCAAATCACTTTGTTT
GGGCAAACCAAGCAGAAATTGAAAAATATCAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4TJJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

82.353

99.674

0.821
  amiF Streptococcus thermophilus LMD-9

82.026

99.674

0.818
  amiF Streptococcus salivarius strain HSISS4

82.026

99.674

0.818

Multiple sequence alignment