Detailed information NTG0998209

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: ABEG07_RS06915
• Genome accession: NZ_CP155636
• Coordinates: 1425501..1427888 (+)
• Length: 795 a.a.
• NCBI ID: WP_002478091.1
• Uniprot ID: -
• Organism: Staphylococcus lugdunensis strain SQ078
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1420501..1432888

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABEG07_RS06890 (ABEG07_06890)	-	1420859..1420999 (+)	141	WP_002458939.1	SAS049 family protein	-
ABEG07_RS06895 (ABEG07_06895)	-	1421201..1422202 (-)	1002	WP_002478089.1	LLM class flavin-dependent oxidoreductase	-
ABEG07_RS06900 (ABEG07_06900)	-	1422432..1423574 (+)	1143	WP_002458941.1	cysteine desulfurase family protein	-
ABEG07_RS06905 (ABEG07_06905)	mnmA	1423574..1424686 (+)	1113	WP_002458942.1	tRNA 2-thiouridine(34) synthase MnmA	-
ABEG07_RS06910 (ABEG07_06910)	-	1424828..1425499 (+)	672	WP_002478090.1	tetratricopeptide repeat protein	-
ABEG07_RS06915 (ABEG07_06915)	recD2	1425501..1427888 (+)	2388	WP_002478091.1	ATP-dependent RecD-like DNA helicase	Machinery gene
ABEG07_RS06920 (ABEG07_06920)	alaS	1428156..1430786 (+)	2631	WP_002478092.1	alanine--tRNA ligase	-
ABEG07_RS06925 (ABEG07_06925)	-	1430852..1431112 (+)	261	WP_002458946.1	IreB family regulatory phosphoprotein	-
ABEG07_RS06930 (ABEG07_06930)	ruvX	1431116..1431544 (+)	429	WP_002458947.1	Holliday junction resolvase RuvX	-
ABEG07_RS06935 (ABEG07_06935)	-	1431557..1431865 (+)	309	WP_070817245.1	DUF1292 domain-containing protein	-
ABEG07_RS06940 (ABEG07_06940)	-	1432228..1432869 (+)	642	WP_002478093.1	O-methyltransferase	-

Sequence

Protein

• Length: 795 a.a.
• Molecular weight: 89613.32 Da
• Isoelectric Point: 4.8263

>NTDB_id=998209 ABEG07_RS06915 WP_002478091.1 1425501..1427888(+) (recD2) [Staphylococcus lugdunensis strain SQ078]
MDNPTLFEPTMLKGTVEVILFQNQDNFYTVLKVDTIESNESFDTMPTVVGFFPNIVEGDVYTFKGQVVAHPKYGKQLKAD
TFEKELPQTKDAIITYLSSDLFKGIGKKTAQNIVNTLGENAINDILAHPDILTKVSNLSKKKQEQIAQQIAANQESEKIM
IHLHDLGFGPKLSMAIYQFYQSETINVVDNNPYKLVYDIKGIGFNKADTLARNIGIDFNDPERLKAGILFTLEEECIKQG
HTYLPAETILKSAQTMLSTQGDEIIEIHQLEEMLQILMEEDKLILDQQKIAIPSLYYSELKSVQNLYRILTHTHKLNELE
QSDLQLHIGEIEDSNEVHYAASQKEALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYADYTDDDFPVVLA
APTGRASKRLQEATGLEAMTIHRLIGWNQDTQPEDILDNEIKAKLIIIDEMSMVDTWLFHQFLNAVPLDAQIVFVGDEDQ
LPSVGPGQVFKDLIQSKKIPRVNLTEVYRQQDGSSIIELAHHMKQNESIDITKRYHDRSFINCSAEQIPDVVKKVVSSAV
SKGYDMSDIQVLAPMYKGSAGIKRLNQILQTILNPKEPDAREIEFGDAAFRKGDKVLQLVNRPNDNIFNGDIGIIVGIFW
AKENALNKDVIIVDFDGNEITFTRQDLIELTHAYCTSIHKSQGSEFPIVIMPVVKQYFRMLQKPILYTGLTRAKQSLVLL
GDPQAFDIGLKTNGQVRMTQLYDLLEAYFGHETQNSTDDNIIAKHKKDTLSAATIYQIDPMINMNQMTPYDFIER

Nucleotide

• Length: 2388 bp

>NTDB_id=998209 ABEG07_RS06915 WP_002478091.1 1425501..1427888(+) (recD2) [Staphylococcus lugdunensis strain SQ078]
ATGGATAACCCTACACTATTTGAACCAACGATGTTAAAGGGCACCGTCGAAGTTATTTTGTTCCAAAATCAAGATAATTT
CTATACTGTACTTAAAGTTGATACCATTGAATCTAATGAATCGTTCGATACGATGCCAACGGTTGTAGGGTTTTTCCCAA
ATATTGTTGAAGGCGACGTATACACCTTTAAAGGACAGGTTGTTGCGCATCCAAAATATGGCAAACAACTAAAAGCTGAT
ACATTTGAAAAAGAATTACCACAAACGAAAGATGCTATTATTACCTACTTATCAAGTGATTTATTTAAAGGTATTGGTAA
AAAGACAGCACAAAATATTGTTAATACTTTGGGAGAAAATGCAATAAATGATATTTTAGCTCATCCAGACATATTAACAA
AAGTTTCAAATCTTTCTAAAAAGAAACAAGAGCAAATTGCACAACAAATAGCAGCCAATCAAGAATCAGAAAAAATCATG
ATACACTTACATGATTTAGGATTTGGCCCTAAACTATCAATGGCAATCTATCAGTTTTATCAAAGTGAAACAATAAACGT
CGTTGATAATAACCCGTATAAACTTGTATATGATATTAAAGGAATTGGATTTAATAAAGCTGATACATTAGCACGTAATA
TCGGCATCGACTTTAATGACCCAGAACGATTAAAAGCTGGCATATTATTCACACTAGAGGAAGAATGTATTAAACAAGGG
CATACTTATTTACCTGCTGAAACAATTCTTAAATCAGCACAAACAATGTTAAGTACGCAAGGGGATGAAATAATTGAAAT
ACATCAACTTGAAGAAATGTTGCAAATTTTAATGGAAGAAGATAAGTTGATTCTTGATCAACAAAAAATTGCCATCCCCA
GTCTTTACTACTCAGAATTAAAAAGCGTACAAAACTTATATCGTATATTAACTCATACCCATAAATTAAATGAACTTGAG
CAATCTGATTTACAGTTGCATATTGGAGAGATAGAAGATAGCAATGAAGTACATTATGCTGCATCACAAAAAGAGGCTTT
ACAAACAGCTATAAACTCAAAAATCATGTTATTAACTGGCGGACCTGGAACTGGTAAGACAACTGTCATTAAAGGTATTG
TAGAGTTATACGCTGAAATTCATGGACTTTCTTTAGATTATGCGGATTACACTGATGATGATTTCCCAGTAGTATTAGCA
GCTCCTACAGGCAGAGCATCGAAACGTTTACAAGAAGCTACTGGCTTAGAGGCAATGACCATCCACCGACTTATAGGATG
GAATCAAGATACACAACCAGAAGACATTTTAGATAATGAAATTAAAGCAAAATTAATTATCATAGATGAAATGTCTATGG
TTGACACTTGGTTATTTCATCAGTTTTTAAATGCGGTACCTTTAGATGCCCAAATTGTATTTGTTGGAGATGAAGACCAA
CTGCCTTCTGTTGGGCCTGGACAAGTATTTAAGGACTTAATCCAGTCTAAAAAAATACCACGTGTCAATTTAACTGAAGT
CTACCGACAACAAGATGGTTCAAGTATTATTGAATTAGCTCACCACATGAAACAAAACGAATCCATAGATATTACAAAAC
GTTATCATGATAGAAGCTTCATTAATTGTAGTGCAGAACAAATTCCTGACGTTGTTAAGAAAGTAGTATCCAGTGCAGTT
AGTAAAGGATATGACATGAGTGATATTCAAGTACTTGCTCCCATGTATAAAGGAAGTGCAGGTATTAAACGTTTAAATCA
AATTCTGCAAACAATTTTAAATCCTAAAGAACCAGACGCCCGTGAAATTGAATTTGGTGATGCTGCATTCCGCAAAGGCG
ATAAAGTATTACAGTTAGTAAATCGTCCTAATGACAATATTTTTAATGGAGATATTGGTATTATTGTTGGCATTTTTTGG
GCAAAAGAAAATGCTTTAAATAAAGATGTTATTATCGTCGATTTTGACGGTAATGAAATTACATTTACACGACAAGACTT
AATTGAATTAACGCATGCATATTGCACTTCGATTCACAAGTCCCAAGGTTCAGAATTCCCAATCGTTATTATGCCCGTAG
TGAAACAATATTTTAGAATGTTACAAAAGCCTATTCTTTATACTGGTTTGACTAGAGCTAAACAATCTTTAGTATTACTA
GGGGATCCACAAGCCTTTGACATTGGTCTTAAAACAAATGGTCAAGTTAGAATGACGCAATTATATGATTTATTAGAAGC
ATATTTTGGACACGAAACGCAGAATTCTACTGATGATAATATCATAGCTAAACATAAAAAAGATACATTATCAGCAGCGA
CAATTTATCAAATAGATCCGATGATTAACATGAATCAAATGACGCCATATGACTTTATTGAACGTTGA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

• AAA domain (AAA_30) (339-544)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	50.063	100	0.503