Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EL020_RS01410 Genome accession   NZ_LR134203
Coordinates   275136..275921 (-) Length   261 a.a.
NCBI ID   WP_006532961.1    Uniprot ID   A0AB33ANX2
Organism   Streptococcus lutetiensis strain NCTC11436     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 270136..280921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL020_RS01390 (NCTC11436_00285) gatB 271200..272642 (-) 1443 WP_020917392.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  EL020_RS01395 (NCTC11436_00286) gatA 272642..274108 (-) 1467 WP_058814212.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  EL020_RS01400 (NCTC11436_00287) gatC 274108..274410 (-) 303 WP_006532958.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  EL020_RS01405 (NCTC11436_00288) - 274588..275136 (-) 549 WP_020917395.1 cysteine hydrolase family protein -
  EL020_RS01410 (NCTC11436_00289) codY 275136..275921 (-) 786 WP_006532961.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EL020_RS01415 (NCTC11436_00290) - 276129..277343 (-) 1215 WP_020917396.1 pyridoxal phosphate-dependent aminotransferase -
  EL020_RS01420 (NCTC11436_00291) - 277380..279146 (-) 1767 WP_058814213.1 glycerophosphodiester phosphodiesterase -
  EL020_RS01425 (NCTC11436_00292) - 279464..279916 (+) 453 WP_014335239.1 universal stress protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28836.91 Da        Isoelectric Point: 4.3995

>NTDB_id=998189 EL020_RS01410 WP_006532961.1 275136..275921(-) (codY) [Streptococcus lutetiensis strain NCTC11436]
MPNLLEKTRKITSILQRSVDSLDTELPYNTMAAQLADIIDCNSCIINGGGTLLGYAMKYKTNTDRVEEFFQAKQFPESYV
KAASRVYDTEANLSVDNDLTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDEEFSEDDLILVEIASTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVSAILGELDGTEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=998189 EL020_RS01410 WP_006532961.1 275136..275921(-) (codY) [Streptococcus lutetiensis strain NCTC11436]
ATGCCGAATTTATTAGAAAAAACACGTAAGATTACATCAATTTTGCAACGCTCTGTTGATAGCCTAGATACTGAATTGCC
ATATAACACAATGGCTGCTCAACTTGCTGACATTATTGATTGTAACTCTTGCATTATCAACGGGGGAGGAACCCTTCTTG
GTTATGCAATGAAATACAAAACTAATACTGACCGTGTTGAGGAATTCTTTCAAGCAAAACAATTCCCAGAAAGTTACGTA
AAAGCAGCTAGTCGTGTTTACGATACTGAAGCTAACTTGTCTGTAGATAATGATTTGACAATTTTCCCAGTTGAATCAAA
AGATATCTATCCTGATGGATTGACAACAATCGCCCCAATCTATGGTGGTGGTATGCGCCTTGGTTCTCTTATCATTTGGC
GTAACGATGAAGAATTTTCAGAAGACGATTTAATCCTTGTTGAAATCGCCTCTACAGTAGTTGGTATTCAATTGCTTAAT
CTTCAAACTGAAAATCTTGAAGAAACAATCCGTAAACAAACAGCCGTTAACATGGCTATCAACACACTTTCATATTCAGA
AATGAAAGCTGTATCTGCTATTTTGGGTGAATTGGACGGGACTGAAGGTCGCTTGACTGCATCAGTTATCGCTGACCGTA
TCGGTATCACACGTTCAGTTATCGTTAATGCCCTTCGTAAATTGGAATCAGCAGGTATCATCGAAAGCCGTTCATTGGGT
ATGAAAGGTACATACCTTAAAGTCATCAATGAAGGTATCTTTGACAAATTAAAGGAATATAATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33ANX2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.517

100

0.655
  codY Bacillus subtilis subsp. subtilis str. 168

51.822

94.636

0.49