Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ABDZ24_RS11370 Genome accession   NZ_CP155623
Coordinates   2089012..2089791 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus paramobilis strain N24509     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2084012..2094791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ24_RS11350 (ABDZ24_11375) trmFO 2084666..2085970 (+) 1305 WP_000211998.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABDZ24_RS11355 (ABDZ24_11380) xerC 2086036..2086935 (+) 900 WP_001101238.1 tyrosine recombinase XerC -
  ABDZ24_RS11360 (ABDZ24_11385) hslV 2086978..2087520 (+) 543 WP_000526271.1 ATP-dependent protease proteolytic subunit HslV -
  ABDZ24_RS11365 (ABDZ24_11390) hslU 2087543..2088934 (+) 1392 WP_000550070.1 ATP-dependent protease ATPase subunit HslU -
  ABDZ24_RS11370 (ABDZ24_11395) codY 2089012..2089791 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ABDZ24_RS11375 (ABDZ24_11400) rpsB 2090142..2090843 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  ABDZ24_RS11380 (ABDZ24_11405) tsf 2090947..2091834 (+) 888 WP_001018583.1 translation elongation factor Ts -
  ABDZ24_RS11385 (ABDZ24_11410) pyrH 2091901..2092623 (+) 723 WP_000042667.1 UMP kinase -
  ABDZ24_RS11390 (ABDZ24_11415) frr 2092626..2093183 (+) 558 WP_000531505.1 ribosome recycling factor -
  ABDZ24_RS11395 (ABDZ24_11420) uppS 2093269..2094045 (+) 777 WP_000971309.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=998134 ABDZ24_RS11370 WP_000421290.1 2089012..2089791(+) (codY) [Bacillus paramobilis strain N24509]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=998134 ABDZ24_RS11370 WP_000421290.1 2089012..2089791(+) (codY) [Bacillus paramobilis strain N24509]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCGGAAGAATACACGCAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCGTTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCGGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTAGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment