Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ABDZ24_RS09235 Genome accession   NZ_CP155623
Coordinates   1700810..1701853 (+) Length   347 a.a.
NCBI ID   WP_001013202.1    Uniprot ID   -
Organism   Bacillus paramobilis strain N24509     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1695810..1706853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ24_RS09200 (ABDZ24_09220) - 1696065..1696439 (+) 375 WP_001012500.1 nucleoside 2-deoxyribosyltransferase -
  ABDZ24_RS09205 (ABDZ24_09225) - 1696519..1697007 (+) 489 WP_000764239.1 hypothetical protein -
  ABDZ24_RS09210 (ABDZ24_09230) - 1697044..1697355 (-) 312 WP_001093241.1 hypothetical protein -
  ABDZ24_RS09215 (ABDZ24_09235) - 1697608..1697823 (+) 216 WP_001008329.1 DUF3912 family protein -
  ABDZ24_RS09220 (ABDZ24_09240) - 1698039..1699433 (-) 1395 WP_001094339.1 L-cystine transporter -
  ABDZ24_RS09225 (ABDZ24_09245) - 1699541..1699783 (-) 243 WP_000440714.1 DUF2626 domain-containing protein -
  ABDZ24_RS09230 (ABDZ24_09250) - 1699909..1700604 (-) 696 WP_097843949.1 helix-turn-helix domain-containing protein -
  ABDZ24_RS09235 (ABDZ24_09255) comGA 1700810..1701853 (+) 1044 WP_001013202.1 competence protein ComGA Machinery gene
  ABDZ24_RS09240 (ABDZ24_09260) comGB 1701846..1702877 (+) 1032 WP_000476187.1 competence type IV pilus assembly protein ComGB -
  ABDZ24_RS09245 (ABDZ24_09265) comGC 1702889..1703188 (+) 300 WP_001178679.1 competence type IV pilus major pilin ComGC -
  ABDZ24_RS09250 (ABDZ24_09270) comGD 1703185..1703640 (+) 456 WP_000810390.1 comG operon protein ComGD -
  ABDZ24_RS09255 (ABDZ24_09275) comGE 1703633..1703935 (+) 303 WP_000829515.1 competence type IV pilus minor pilin ComGE -
  ABDZ24_RS09260 (ABDZ24_09280) comGF 1703905..1704375 (+) 471 WP_000923090.1 competence type IV pilus minor pilin ComGF -
  ABDZ24_RS09265 (ABDZ24_09285) comGG 1704372..1704743 (+) 372 WP_001231184.1 competence type IV pilus minor pilin ComGG -
  ABDZ24_RS09270 (ABDZ24_09290) - 1704918..1705568 (+) 651 WP_346817812.1 2OG-Fe(II) oxygenase -
  ABDZ24_RS09275 (ABDZ24_09295) - 1705687..1706184 (+) 498 WP_000836636.1 shikimate kinase -
  ABDZ24_RS09280 (ABDZ24_09300) - 1706223..1706423 (+) 201 WP_000106076.1 YqzE family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39356.96 Da        Isoelectric Point: 9.0695

>NTDB_id=998129 ABDZ24_RS09235 WP_001013202.1 1700810..1701853(+) (comGA) [Bacillus paramobilis strain N24509]
MNGIESFANMILKEACRVQASDLHVVPRKKDVVVQLRIGKDLMMKHCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAVKEANGEC
VTYKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=998129 ABDZ24_RS09235 WP_001013202.1 1700810..1701853(+) (comGA) [Bacillus paramobilis strain N24509]
ATGAATGGAATTGAAAGTTTTGCGAATATGATTTTGAAAGAGGCGTGTAGGGTACAAGCGTCGGACTTACATGTTGTGCC
CCGGAAGAAGGATGTAGTGGTTCAACTACGTATAGGAAAAGATTTAATGATGAAACATTGTATCGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGGCAAGAAGTATATTTACGCCTTTCCACGCTACCAACTGTATATCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTCTCTTTTTTAC
ACTATTCACATGGGTTACTCGTATTTACTGGACCAACTGGTTCTGGAAAGACAACAACAATGTATGCATTATTAGAGGTC
ATTAGAAAAAAGAAAACACGTCGTATCGTTACGCTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCGGGATTGAAGGCTATTTTACGTCATGATCCGGATATTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGACATTTAGTAATGACGACACTGCAT
ACGAATGATGCGAAAGGGGCGATACTCAGGTTCATGGATTTTGGTATAACGAGGCAAGAAATTGAACAATCTTTATTGGC
TATAGCTGCACAGCGACTTGTCGAATTGAAGTGCCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTCAGACAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGGTTAAAGAAGCAAACGGGGAATGT
GTCACATACAAGCACGAAACATTAGAATCTTCGATACGAAAAGGATACGCTTTAGGATTTTTAGAAGAGGATGTGTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.637

100

0.576

Multiple sequence alignment