Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EL036_RS05965 Genome accession   NZ_LR134193
Coordinates   1212684..1213457 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain NCTC13616     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1207684..1218457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL036_RS05945 (NCTC13616_01143) trmFO 1208028..1209335 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  EL036_RS05950 (NCTC13616_01144) xerC 1209752..1210648 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  EL036_RS05955 (NCTC13616_01145) hslV 1210645..1211190 (+) 546 WP_000072678.1 ATP-dependent protease subunit HslV -
  EL036_RS05960 (NCTC13616_01146) hslU 1211256..1212659 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  EL036_RS05965 (NCTC13616_01147) codY 1212684..1213457 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EL036_RS05970 - 1213508..1213600 (+) 93 WP_031788481.1 hypothetical protein -
  EL036_RS05975 (NCTC13616_01148) rpsB 1213799..1214566 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  EL036_RS05980 - 1214600..1214713 (+) 114 WP_001789890.1 hypothetical protein -
  EL036_RS05985 (NCTC13616_01149) tsf 1214748..1215629 (+) 882 WP_000201387.1 translation elongation factor Ts -
  EL036_RS05990 (NCTC13616_01150) pyrH 1215766..1216488 (+) 723 WP_000057330.1 UMP kinase -
  EL036_RS05995 (NCTC13616_01151) frr 1216507..1217061 (+) 555 WP_001280005.1 ribosome recycling factor -
  EL036_RS06000 (NCTC13616_01152) - 1217434..1218204 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=998129 EL036_RS05965 WP_000055337.1 1212684..1213457(+) (codY) [Staphylococcus aureus strain NCTC13616]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=998129 EL036_RS05965 WP_000055337.1 1212684..1213457(+) (codY) [Staphylococcus aureus strain NCTC13616]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment