Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   ELZ51_RS09725 Genome accession   NZ_LR134094
Coordinates   1917540..1920014 (+) Length   824 a.a.
NCBI ID   WP_126427308.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1912540..1925014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ51_RS09705 (NCTC4669_02048) - 1914954..1915499 (-) 546 WP_115253127.1 CvpA family protein -
  ELZ51_RS09710 (NCTC4669_02049) - 1915502..1915810 (-) 309 WP_003052702.1 hypothetical protein -
  ELZ51_RS09715 (NCTC4669_02050) rnhC 1915967..1916875 (+) 909 WP_126427306.1 ribonuclease HIII -
  ELZ51_RS09720 (NCTC4669_02051) lepB 1916887..1917480 (+) 594 WP_003052704.1 signal peptidase I -
  ELZ51_RS09725 (NCTC4669_02052) recD/recD2/recDB 1917540..1920014 (+) 2475 WP_126427308.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ELZ51_RS09730 (NCTC4669_02053) - 1920087..1920575 (+) 489 WP_037585028.1 hypothetical protein -
  ELZ51_RS09735 (NCTC4669_02054) dinB 1920664..1921761 (-) 1098 WP_003052709.1 DNA polymerase IV -
  ELZ51_RS09740 (NCTC4669_02055) pflB 1921970..1924297 (+) 2328 WP_126427310.1 formate C-acetyltransferase -
  ELZ51_RS09745 (NCTC4669_02056) - 1924401..1924844 (+) 444 WP_126427312.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 824 a.a.        Molecular weight: 92055.12 Da        Isoelectric Point: 4.6009

>NTDB_id=997776 ELZ51_RS09725 WP_126427308.1 1917540..1920014(+) (recD/recD2/recDB) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
MEHFFTGTVDRIIFENAANFFKILLLAIEDTDSDIDDFEIIITGTMADIIEGDDYTFWGELTQHPKYGQQLKLSRYQKVK
PSSSGLVNYFSSDHFKGIGKKTAEKIIALYGNNTIDHILEDPSKLETISGLSKANRQAFVAKLKLNYGTEQLIAGLVELG
LSNRFAFQAFEKYKEEALDLVKENPYQLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESVSRGDTYVQAR
QLLDFTITLLEDARQVECDPAAVAEQLSELIIEGKIKNSDTKLFDASLYFAEEGIAKNISRLLDTPLSQSFSHDTIQTTV
QAVQEDFAITYDQVQQEAIAKALTSKVFLLTGGPGTGKTTVIRGILQAYANLHQIDLDKKDLPILLAAPTGRAARRMNEL
TGIPSATIHRHLGLNGDNDYQAMEDYLDCDLLIVDEFSMVDTWLANQLLAAISSTTQVIIVGDSDQLPSVGPGQVLSDLL
KVNSLPQIALQKIFRQSQESTIVDLADQMRRGILAADFRDKKADRSYFEAQASFIPDMIQKIVLSAIKSGIPAEEIQILA
PMYKGQAGINHLNQLMQNLLNPLEGQTEFLFNDTHFRKGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELILD
FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNLIYTAITRSKSKLIMLGEIAAFDYAIKNEG
DKRQTYLIEHFQEQSDLVSSQPNQELKSKEQTSLFSNTATLEDDSQKSSSQPTNSNPTENSQSDNHNLRLTPENYSTIDP
MIGLTDSDIALFFQKKPTKTDILD

Nucleotide


Download         Length: 2475 bp        

>NTDB_id=997776 ELZ51_RS09725 WP_126427308.1 1917540..1920014(+) (recD/recD2/recDB) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
ATGGAACACTTTTTTACAGGTACTGTTGACCGCATTATCTTTGAAAATGCAGCTAATTTTTTTAAAATTCTCCTCCTTGC
TATCGAAGACACAGATAGTGATATTGACGACTTTGAAATCATTATCACAGGGACGATGGCTGACATTATCGAAGGAGATG
ACTACACCTTTTGGGGAGAATTGACCCAGCACCCTAAATATGGACAGCAACTCAAACTAAGCCGTTACCAAAAAGTCAAA
CCTAGTTCATCTGGTTTGGTTAATTATTTCTCTAGCGACCATTTTAAGGGGATTGGAAAGAAAACAGCGGAGAAAATCAT
TGCCCTCTATGGCAATAATACTATTGACCATATTTTAGAAGACCCAAGTAAATTAGAAACTATCTCTGGTCTGTCCAAGG
CTAATCGTCAAGCCTTTGTCGCTAAACTGAAATTGAATTATGGCACAGAGCAACTGATTGCTGGTCTCGTCGAACTTGGC
CTTAGCAACCGTTTTGCCTTTCAAGCGTTTGAGAAGTACAAAGAAGAGGCTCTTGACCTTGTTAAAGAAAATCCCTATCA
GTTAGTCGAAGATTTACAAGGTTTTGGGTTTAAGATGGCAGATGCTCTCGCTGAAAACTTAGGGATTGAGAGTGACTCTC
CAAAACGTTTTCGTGCCGCTCTACTGCACTGTCTCTTGGAAGAGTCCGTCAGTCGAGGAGATACTTATGTCCAAGCACGA
CAATTATTAGACTTTACCATCACACTCCTTGAAGATGCACGTCAAGTAGAATGTGACCCTGCTGCTGTGGCTGAACAACT
AAGCGAGTTAATCATAGAGGGCAAAATCAAAAACAGTGACACCAAATTGTTTGATGCTAGCCTTTATTTTGCTGAAGAGG
GGATTGCTAAGAATATCTCTCGTCTCTTAGATACCCCTTTAAGTCAGTCATTTAGTCATGATACCATCCAAACAACCGTC
CAAGCCGTTCAGGAAGACTTTGCTATCACTTATGACCAGGTGCAGCAAGAAGCCATTGCTAAAGCCTTAACCAGCAAGGT
ATTTCTCCTAACAGGTGGTCCCGGAACAGGGAAAACAACTGTTATTCGAGGCATTTTACAGGCTTACGCTAACCTGCATC
AGATTGATTTGGATAAAAAAGACCTTCCTATCTTGTTAGCAGCTCCAACAGGTCGGGCTGCACGTCGTATGAATGAGTTG
ACTGGAATTCCTAGCGCAACCATCCACAGACACTTAGGCCTCAATGGCGACAACGATTACCAAGCCATGGAAGATTATCT
GGACTGCGACTTGCTGATTGTCGATGAATTTTCAATGGTGGATACCTGGCTTGCCAACCAATTGTTAGCAGCGATTAGTT
CAACAACTCAAGTGATCATCGTCGGAGATAGTGACCAGCTTCCTTCGGTTGGTCCCGGTCAAGTCCTGTCAGATCTTTTA
AAAGTCAATAGCCTGCCCCAAATCGCCTTGCAGAAAATCTTTCGTCAATCCCAAGAATCTACTATTGTAGATTTGGCAGA
CCAGATGCGTCGAGGAATCTTAGCTGCTGACTTTCGTGATAAAAAAGCTGACCGTTCTTATTTTGAAGCCCAAGCCTCTT
TCATCCCGGACATGATTCAAAAAATTGTTCTATCTGCTATTAAAAGTGGCATCCCTGCTGAGGAAATTCAAATTTTAGCG
CCTATGTACAAAGGACAGGCTGGCATCAATCATCTTAACCAATTGATGCAAAACCTCCTCAATCCTTTGGAAGGGCAAAC
GGAATTTCTGTTCAATGATACGCATTTTCGTAAAGGTGATAAAGTCTTGCACTTAGTCAACGATGCTCAGTTGAATGTCT
TTAATGGAGATATTGGTTATATTACAGATTTGATTCCTGCTAAATATACCGAATCTAAACAAGACGAATTAATCTTAGAT
TTTGACGGTAGCGAGGTAACATATCCTAGAAATGAATGGCTAAAATTAACCCTAGCCTATGCCATGAGCATTCATAAGTC
GCAAGGGAGCGAGTTTCAAGTGGTAATTTTACCCATCACACGCCAAAGCGGCCGACTTTTGCAACGAAATTTGATTTACA
CAGCGATTACTCGATCTAAAAGTAAATTGATTATGCTAGGCGAAATCGCTGCCTTTGATTACGCCATCAAAAATGAAGGA
GATAAGCGCCAAACCTACTTGATTGAACATTTTCAAGAACAATCCGACTTAGTCTCCTCTCAACCTAACCAAGAGCTAAA
ATCAAAAGAGCAGACCTCCCTTTTTTCTAATACGGCCACCCTTGAGGACGACTCTCAAAAATCTTCCTCTCAACCAACAA
ACTCTAATCCCACTGAGAACTCTCAGTCAGATAATCACAATCTTAGGTTAACACCTGAGAATTATTCGACTATCGATCCG
ATGATAGGGCTTACAGACTCAGATATTGCCCTCTTTTTCCAGAAAAAACCTACAAAAACGGATATTCTCGATTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)

AAA domain (AAA_30)

(331-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.685

90.413

0.386