Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   KZZ19_RS21545 Genome accession   NZ_CP155559
Coordinates   4158698..4161037 (-) Length   779 a.a.
NCBI ID   WP_237979561.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HSY204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4153698..4166037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZZ19_RS21525 (KZZ19_021520) - 4154895..4155071 (-) 177 WP_016086173.1 hypothetical protein -
  KZZ19_RS21530 (KZZ19_021525) - 4155285..4155725 (-) 441 WP_001266955.1 D-tyrosyl-tRNA(Tyr) deacylase -
  KZZ19_RS21535 (KZZ19_021530) relA 4155743..4157926 (-) 2184 WP_002145623.1 GTP diphosphokinase -
  KZZ19_RS21540 (KZZ19_021535) - 4158137..4158649 (-) 513 WP_000346213.1 adenine phosphoribosyltransferase -
  KZZ19_RS21545 (KZZ19_021540) recJ 4158698..4161037 (-) 2340 WP_237979561.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  KZZ19_RS21550 (KZZ19_021545) - 4161139..4162032 (-) 894 WP_087982109.1 cation diffusion facilitator family transporter -
  KZZ19_RS21555 (KZZ19_021550) secDF 4162189..4164453 (-) 2265 WP_237979562.1 protein translocase subunit SecDF -
  KZZ19_RS21560 (KZZ19_021555) - 4164724..4165008 (-) 285 WP_000890213.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88165.68 Da        Isoelectric Point: 4.9286

>NTDB_id=997765 KZZ19_RS21545 WP_237979561.1 4158698..4161037(-) (recJ) [Bacillus thuringiensis strain HSY204]
MLQPKTRWKEKEYNNERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLLSDDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVENNFSPEDNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDVFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANVAELPKEKITMVYFSEEVLNKFSLEDYKEHMMHASEVTHLDDQYIVLLNLPKGTDELRD
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLSQKAPFSLRQYGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=997765 KZZ19_RS21545 WP_237979561.1 4158698..4161037(-) (recJ) [Bacillus thuringiensis strain HSY204]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATAATGAGCGAGTGAGTGAATTAGCAAGTAAATTACAATT
ATCACCACTTGTCGTTTCGTTATTCCTCGGTAGAGGACTAGATACAGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCATGATCCATTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGACTACGATGCGGACGGAGTAAGTAGTACGACTGTGTTATATCTTGCCTTGCAAGAATT
AGGTGCAGACGTAGAATTTTATATTCCAAACCGTTTTACAGAAGGATATGGACCGAACGAAGAAGCATTTCGTTGGGCAC
ATAGCGCAGGATTCTCACTAATTATTACTGTCGATACTGGTATCGCAGCAGTACATGAAGCGAATGTGGCGAAAGAACTT
GGAATAGATCTTATTATTACAGATCACCATGAGCCACCACCAGAATTGCCAGAAGCACTTGCAATTATTCATCCGAAATT
AGATGGCGGTGTATATCCGTTTCACTATTTAGCTGGTGTAGGTGTTGCGTTTAAAGTTGCACATGCACTACTAGGCCGTG
TACCAGAGCATTTATTAGAAATTGCAGTAATTGGTACAGTAGCCGATTTAGTGTCACTTCATGGTGAGAATAGATTGCTA
GTGAAGCGCGGTTTAAAGCATATGCGCATGACAAAAAATATCGGACTAAAGGCGCTATTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACAGAAGAGAGCATTGGTTTCTCGATCGCACCGCGTATTAATGCAGTTGGACGTTTAGAAGATGCTACGC
CGGCTGTACATCTTTTATTATCAGATGATCCAGAAGAAGCGAAAGAGCTAGCTGAAGAAATTGATGAGCTGAACAAACTG
CGAAAAGATATTGTAAAGCAAATTACAGAAGAAGCTATCGCTGAAGTGGAAAATAATTTCTCGCCAGAAGACAATAAAGT
ACTAGTACTGGCAAAAGAAGGCTGGAATCCAGGTGTAATTGGAATTGTCGCATCTAAATTAGTTGAACGTTTTTATCGTC
CAACGATTGTATTATGCATTGATCCTGTAAAAGAAACAGCAAAAGGTTCAGCACGTAGTATTGCAGGATTTGATTTGTTT
GCAAATTTGTCAGATTGTAGAGAGTTATTGCCACACTTCGGAGGGCATCCGATGGCAGCGGGAATGACGCTACATATGAA
TGATGTAGATGAATTACGCCGCCGCTTAAATGAACAAGCAGAGGTAATTTTAACAGAAGAAGATTTTATTCCAATTACAG
CTGTTGATGTCTTTTGTAAAGTGGAGGATGTAACACTGGCAGCAATTGAAGACATGCAAAAGTTAGCGCCATTTGGCGTT
GGAAACCCAAAACCACGTATTGCAGTGAAGGATGCAGAGTTAGAAAGTATTCGTGCAATCGGATCAGATGGCTCTCATTT
GAAAATGGCTCTTCGCGATGGACAAGCGACACTAGATACAATTGGATTTGGTTTTGGTGCCTATGCGAAAGAAATTTCTC
CAGTTGCAAAGGTATCTGTAATAGGGGAAGCATCTATCAATGAATGGAATAATTTTAAGAAGCCGCAATTAATGGTGCAA
GATATTGCTGTAGAGGCGTGGCAATTATTTGATTGGCGTAGTATGCGTAACGTAGAAGCGAATGTAGCAGAACTTCCGAA
AGAAAAAATAACGATGGTGTATTTTTCTGAAGAGGTATTGAATAAATTTTCTTTAGAAGACTATAAAGAGCATATGATGC
ATGCATCAGAAGTAACTCATTTAGACGATCAATACATCGTGTTACTTAATTTACCAAAAGGAACAGATGAATTAAGAGAT
CTATTTAAAGTTGGGTTCCCGTCGCGAATTTATACGCTATTTTATCAAGAGAATAATCATTTATTTAGTACTGTTCCAAC
GAGGGAACATTTTAAATGGTACTATTCGTTCTTGAGCCAAAAAGCACCATTTTCTTTAAGACAATATGGAGAACAACTAT
GCCGACATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GATGGCGTCATTTTTATGGCAGACAAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.584

99.358

0.522

Multiple sequence alignment