Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ELZ51_RS01225 Genome accession   NZ_LR134094
Coordinates   203440..204729 (-) Length   429 a.a.
NCBI ID   WP_003049414.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 198440..209729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ51_RS01185 (NCTC4669_00254) - 198453..200030 (+) 1578 WP_126425705.1 ATP-binding cassette domain-containing protein -
  ELZ51_RS01190 (NCTC4669_00255) - 200050..200388 (+) 339 WP_126425707.1 hypothetical protein -
  ELZ51_RS01195 (NCTC4669_00256) - 200391..200759 (+) 369 WP_003049405.1 hypothetical protein -
  ELZ51_RS11600 - 200925..201071 (-) 147 WP_080504454.1 putative holin-like toxin -
  ELZ51_RS01205 - 201211..202044 (+) 834 Protein_195 phage tail tip lysozyme -
  ELZ51_RS01210 - 202042..203001 (+) 960 Protein_196 site-specific integrase -
  ELZ51_RS01225 (NCTC4669_00262) rarA 203440..204729 (-) 1290 WP_003049414.1 replication-associated recombination protein A Machinery gene
  ELZ51_RS01230 (NCTC4669_00263) - 204762..205328 (-) 567 WP_126425709.1 aminodeoxychorismate/anthranilate synthase component II -
  ELZ51_RS01235 (NCTC4669_00264) pabB 205361..207118 (-) 1758 WP_126425711.1 aminodeoxychorismate synthase component I -
  ELZ51_RS01240 (NCTC4669_00265) - 207265..209277 (-) 2013 WP_126425713.1 amidase family protein -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 47223.88 Da        Isoelectric Point: 6.6991

>NTDB_id=997705 ELZ51_RS01225 WP_003049414.1 203440..204729(-) (rarA) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
MPDHLALRMRPKTISEVIGQEHLVGEGKIIHRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKRALQ
TAITDKERGFAFDVMLDDNALDFIATATNGDLRSAYHSLDLAVMSTKPDSDGKRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKAIRGSDVNASLHYAARLVEAGDLPSLARRLIVIAYEDIGLANPDAQVHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALSDLRTSGNLPIPRHLRDGHYAGSKELGNAKDYLYPHAYPEKWVKQQYLPDKLIGKQYFSP
NETGKYERALGANKERIDKLSSHSTGIPK

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=997705 ELZ51_RS01225 WP_003049414.1 203440..204729(-) (rarA) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
ATGCCCGATCATTTAGCGCTCCGCATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAGAACATCTTGTTGGCGAAGG
CAAAATCATCCATCGCATGGTGGAAGCCAATATGCTATCGTCCATGATTCTCTATGGTCCTCCAGGAATCGGTAAAACTT
CCATTGCTAGCGCTATTGCAGGTACCACCAAGTATGCCTTTAGAACCTTTAATGCCACCGTTGATAGCAAAAAACGTCTC
CAAGAAATTGCTGAGGAGGCCAAATTTTCAGGAGGATTGGTATTGCTACTAGACGAGATTCATCGACTGGACAAAACCAA
ACAAGACTTCCTGCTCCCCTTACTGGAAAATGGCACCATTATCATGATTGGCGCAACCACTGAGAATCCCTTCTTCTCAG
TGACACCCGCTATCAGAAGCCGGGTCCAGATTTTTGAACTGGAACCTCTCTCCAACGAGGATATCAAGCGTGCCCTTCAA
ACTGCCATTACCGATAAAGAAAGAGGCTTTGCCTTTGACGTGATGCTTGACGATAATGCTCTTGATTTTATCGCAACGGC
TACCAATGGTGACTTACGCTCAGCCTATCACTCTCTGGATCTAGCAGTCATGTCCACAAAGCCAGATAGCGACGGGAAGC
GACACATCACCTTAGACACTGTTGAAAATTCCTTGCAGCGCAGCTATATTACTATGGATAAGGATGGCGACGGGCATTAC
GATGTGCTATCTGCTCTCCAAAAAGCTATTCGCGGCTCCGATGTCAATGCCAGTCTTCACTATGCGGCACGATTAGTGGA
AGCGGGCGATTTACCAAGCCTAGCCAGACGATTGATTGTGATTGCTTATGAAGATATTGGTTTGGCTAATCCTGACGCCC
AAGTCCATACCGTTACCGCACTTGATGCCGCTCAGAAAATCGGTTTCCCAGAAGCACGTATTCTAATTGCTAACGTGGTC
ATTGATTTGGCCTTATCCCCAAAATCTAACTCAGCTTATCTGGCCATGGATGCTGCCTTAAGCGATTTGAGAACATCAGG
AAACCTTCCTATTCCAAGGCATTTGAGAGATGGGCATTATGCCGGCAGTAAAGAACTGGGTAATGCCAAAGATTATCTTT
ACCCCCACGCTTACCCTGAAAAATGGGTGAAACAACAGTACCTGCCAGATAAATTAATCGGTAAACAGTATTTTTCCCCC
AACGAAACAGGAAAATATGAACGTGCCCTGGGGGCCAATAAAGAGCGTATTGACAAGCTTTCTAGTCACTCAACCGGAAT
CCCAAAATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.671

97.203

0.59

Multiple sequence alignment