Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABC806_RS01775 Genome accession   NZ_CP155539
Coordinates   334994..335977 (+) Length   327 a.a.
NCBI ID   WP_223715127.1    Uniprot ID   -
Organism   Streptococcus pneumoniae TIGR4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 329994..340977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC806_RS01750 (ABC806_01750) - 330073..330483 (+) 411 WP_000595758.1 hypothetical protein -
  ABC806_RS01755 (ABC806_01755) ply 330494..331909 (+) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  ABC806_RS01760 (ABC806_01760) - 332790..333506 (+) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ABC806_RS01765 (ABC806_01765) - 333630..334101 (+) 472 Protein_318 MarR family winged helix-turn-helix transcriptional regulator -
  ABC806_RS01770 (ABC806_01770) rcrP 334118..334939 (+) 822 WP_000601684.1 ABC transporter permease Regulator
  ABC806_RS01775 (ABC806_01775) rcrQ 334994..335977 (+) 984 WP_223715127.1 ATP-binding cassette domain-containing protein Regulator
  ABC806_RS01780 (ABC806_01780) - 336043..336405 (+) 363 WP_000078805.1 DUF2200 domain-containing protein -
  ABC806_RS01785 (ABC806_01785) - 336402..336905 (+) 504 WP_000800931.1 phosphatase PAP2 family protein -
  ABC806_RS01790 (ABC806_01790) - 337019..337465 (+) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  ABC806_RS01795 (ABC806_01795) - 337471..338145 (+) 675 WP_000725749.1 membrane protein -
  ABC806_RS01800 (ABC806_01800) - 338354..338497 (+) 144 WP_000599602.1 cell wall-binding protein -
  ABC806_RS01805 (ABC806_01805) - 338522..338584 (+) 63 WP_219335539.1 hypothetical protein -
  ABC806_RS01810 (ABC806_01810) - 338609..338740 (-) 132 WP_001811306.1 hypothetical protein -
  ABC806_RS01815 (ABC806_01815) - 338834..339133 (+) 300 WP_001013974.1 DUF4651 domain-containing protein -
  ABC806_RS01820 (ABC806_01820) - 339130..339447 (+) 318 WP_000615765.1 thioredoxin family protein -
  ABC806_RS01825 (ABC806_01825) ytpR 339463..340089 (+) 627 WP_000578285.1 YtpR family tRNA-binding protein -
  ABC806_RS01830 (ABC806_01830) - 340131..340892 (+) 762 WP_001107746.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 36245.01 Da        Isoelectric Point: 4.4769

>NTDB_id=997561 ABC806_RS01775 WP_223715127.1 334994..335977(+) (rcrQ) [Streptococcus pneumoniae TIGR4]
MVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTVAFIGSTGSGKSTLVNL
IPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGSIRIDGVDTKAMTRSEVHDA
FSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVRQKQLLTIARALLKDAP
LLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEELMAQGGFYADLYNSQF
TEDEAEE

Nucleotide


Download         Length: 984 bp        

>NTDB_id=997561 ABC806_RS01775 WP_223715127.1 334994..335977(+) (rcrQ) [Streptococcus pneumoniae TIGR4]
ATGGTCTCTGCTAAGCGGATTAATCAAGTTTTAGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGA
TGAAAACTTCAAAGGTCAGGTCGAGTTTAAGGATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATG
TTAGCTTTAAAGCAGAAACTGGTCAAACAGTGGCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTG
ATTCCACGTTTCTACGACGTGTCAGCAGGAGAAATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGAC
AGCTCATGCTGGTCAAAAGGTTGCCATTGTTGGGCCGACTGGGGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAAT
TCTATGAGATTGATAAGGGAAGTATTCGCATTGATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCC
TTTTCAATGGTCTTGCAGGATACCTGGCTCTTTGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAG
TGATGAACGAATGATGGAAGCTAGTAAGGCTGTGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCA
TCTTGGATGACACCGTGACCTTGTCTGTAAGACAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCG
CTTTTGATTTTGGATGAGGCGACTTCTTCTGTTGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGAT
GGAAGGACGCACATCCTTTGTCATTGCCCACCGCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATG
GAAATATCATCGAGCAAGGCAACTATGAGGAACTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTT
ACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(52-102)

ABC transporter (ABC_tran)

(104-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.804

68.502

0.554

Multiple sequence alignment