Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ELZ60_RS08430 Genome accession   NZ_LR134090
Coordinates   1685110..1685883 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain NCTC9555     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1680110..1690883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ60_RS08395 (NCTC9555_01582) - 1680363..1681133 (-) 771 WP_000473705.1 isoprenyl transferase -
  ELZ60_RS08400 (NCTC9555_01583) frr 1681506..1682060 (-) 555 WP_001280006.1 ribosome recycling factor -
  ELZ60_RS08405 (NCTC9555_01584) pyrH 1682079..1682801 (-) 723 WP_000057330.1 UMP kinase -
  ELZ60_RS08410 (NCTC9555_01585) tsf 1682938..1683819 (-) 882 WP_000201387.1 translation elongation factor Ts -
  ELZ60_RS08415 - 1683854..1683967 (-) 114 WP_001789890.1 hypothetical protein -
  ELZ60_RS08420 (NCTC9555_01586) rpsB 1684001..1684768 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  ELZ60_RS08425 - 1684967..1685059 (-) 93 WP_031788481.1 hypothetical protein -
  ELZ60_RS08430 (NCTC9555_01587) codY 1685110..1685883 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ELZ60_RS08435 (NCTC9555_01588) hslU 1685908..1687311 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ELZ60_RS08440 (NCTC9555_01589) hslV 1687377..1687922 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ELZ60_RS08445 (NCTC9555_01590) xerC 1687919..1688815 (-) 897 WP_001015610.1 tyrosine recombinase XerC -
  ELZ60_RS08450 (NCTC9555_01591) trmFO 1689232..1690539 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=997405 ELZ60_RS08430 WP_000055337.1 1685110..1685883(-) (codY) [Staphylococcus aureus strain NCTC9555]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=997405 ELZ60_RS08430 WP_000055337.1 1685110..1685883(-) (codY) [Staphylococcus aureus strain NCTC9555]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCGCCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCGATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment